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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_11045 and IAI47_11050 are separated by 75 nucleotides
IAI47_11050 and IAI47_11055 are separated by 133 nucleotides
IAI47_11055 and IAI47_11060 are separated by 60 nucleotides
IAI47_11060 and IAI47_11065 are separated by 66 nucleotides
IAI47_11045: IAI47_11045 - hypothetical protein, at 2,328,233 to 2,328,406
_11045
IAI47_11050: IAI47_11050 - multidrug effflux MFS transporter, at 2,328,482 to 2,329,669
_11050
IAI47_11055: IAI47_11055 - ammonia-dependent NAD(+) synthetase, at 2,329,803 to 2,330,627
_11055
IAI47_11060: IAI47_11060 - aromatic amino acid DMT transporter YddG, at 2,330,688 to 2,331,578
_11060
IAI47_11065: IAI47_11065 - excinuclease Cho, at 2,331,645 to 2,332,505
_11065
Group
Condition
IAI47
_11045
IAI47
_11050
IAI47
_11055
IAI47
_11060
IAI47
_11065
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.0
+0.1
N.D.
-0.5
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
-0.8
+0.0
N.D.
+0.0
-0.9
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.7
-0.1
N.D.
-0.1
-0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
+0.2
N.D.
-0.7
-0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
+0.4
N.D.
-0.2
-0.9
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.0
+0.0
N.D.
-0.1
-0.1
stress
copper (II) chloride 2 uM, anaerobic
-0.4
-0.3
N.D.
-0.5
-0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.4
N.D.
-0.5
-0.4
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.2
N.D.
-0.4
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-0.8
-0.0
N.D.
+0.3
-0.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.6
+0.1
N.D.
+0.0
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
+0.2
N.D.
-0.3
-0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
-0.2
N.D.
-0.3
+0.2
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.3
N.D.
-0.1
-0.6
nitrogen source
Ammonium chloride (N)
+0.1
+0.2
N.D.
-0.4
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.8
+0.5
N.D.
-0.1
-0.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
+0.4
N.D.
-0.2
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.2
N.D.
-0.3
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.3
+0.3
N.D.
-0.4
-0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.8
+0.3
N.D.
+0.0
-0.1
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.4
N.D.
-0.0
+0.3
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.3
N.D.
+0.1
-0.8
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
+0.0
N.D.
+0.4
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
+0.0
N.D.
-0.1
-0.8
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50
+0.2
+0.3
N.D.
+0.1
-0.7
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-0.3
N.D.
-0.2
+0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
+0.3
N.D.
-0.0
-0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.2
N.D.
-0.3
+0.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.7
+0.1
N.D.
+0.2
+0.2
stress
copper (II) chloride 2 uM, anaerobic
-0.1
+0.3
N.D.
+0.3
+0.9
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IAI47_11055
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IAI47_11065
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