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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_10720 and IAI47_10725 are separated by 150 nucleotides
IAI47_10725 and IAI47_10730 are separated by 5 nucleotides
IAI47_10730 and IAI47_10735 overlap by 4 nucleotides
IAI47_10735 and IAI47_10740 are separated by 0 nucleotides
IAI47_10720: IAI47_10720 - transcriptional regulator SlyA, at 2,267,897 to 2,268,334
_10720
IAI47_10725: IAI47_10725 - DUF1656 domain-containing protein, at 2,268,485 to 2,268,721
_10725
IAI47_10730: IAI47_10730 - HlyD family secretion protein, at 2,268,727 to 2,269,584
_10730
IAI47_10735: IAI47_10735 - FUSC family protein, at 2,269,581 to 2,271,581
_10735
IAI47_10740: IAI47_10740 - hypothetical protein, at 2,271,582 to 2,272,049
_10740
Group
Condition
IAI47
_10720
IAI47
_10725
IAI47
_10730
IAI47
_10735
IAI47
_10740
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-2.6
+0.3
+0.1
-0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.6
-1.9
+0.3
+0.0
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-1.1
-0.2
-0.1
-0.5
stress
Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
-0.0
-1.9
-0.2
-0.2
+0.0
no stress control
Defined media control, anaerobic
+0.2
-2.2
+0.1
+0.0
-0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.7
-2.3
-0.2
-0.3
+0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-2.1
+0.1
-0.0
-0.3
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-1.4
-0.1
-0.1
-0.3
stress
Manganese (II) chloride tetrahydrate 50 uM, aerobic
+0.5
-1.8
-0.3
-0.1
+0.3
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.7
-1.4
-0.1
+0.0
-0.5
stress
Manganese (II) chloride tetrahydrate 50 uM, aerobic
+0.5
-1.9
-0.1
+0.0
+0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-2.3
+0.1
+0.2
+0.5
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-1.4
+0.5
+0.2
-0.3
stress
copper (II) chloride 2 uM, anaerobic
-0.4
-1.3
+0.7
-0.0
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50
+0.4
-1.7
+0.1
+0.0
+0.2
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.9
-0.9
-0.3
-0.1
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
-0.8
-0.3
+0.3
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
+0.8
-1.3
+0.3
+0.1
-0.1
nitrogen source
nitrogen source nitrite 1mM
-0.6
-0.5
+0.0
-0.1
+1.2
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.3
+1.1
+0.4
+0.1
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.0
+1.4
+0.3
-0.0
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.1
-0.9
+0.4
-0.0
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
+1.4
+0.3
-0.2
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.3
+0.5
+0.1
-0.1
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.9
+1.0
+0.3
+0.1
-0.0
stress
copper (II) chloride 2 uM, anaerobic
-0.8
+2.0
+0.6
+0.1
+0.7
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+2.6
+0.1
+0.1
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
+1.1
+0.4
-0.0
+0.5
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.5
+1.1
+0.0
-0.0
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.3
+1.4
+0.6
-0.0
+0.3
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