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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_10620 and IAI47_10625 are separated by 102 nucleotides
IAI47_10625 and IAI47_10630 are separated by 66 nucleotides
IAI47_10630 and IAI47_10635 are separated by 366 nucleotides
IAI47_10635 and IAI47_10640 are separated by 97 nucleotides
IAI47_10620: IAI47_10620 - UV damage endonuclease UvsE, at 2,244,166 to 2,245,176
_10620
IAI47_10625: IAI47_10625 - MmcQ/YjbR family DNA-binding protein, at 2,245,279 to 2,245,644
_10625
IAI47_10630: IAI47_10630 - metal-binding protein ZinT, at 2,245,711 to 2,246,382
_10630
IAI47_10635: IAI47_10635 - catalase HPII, at 2,246,749 to 2,249,013
_10635
IAI47_10640: IAI47_10640 - Tar ligand binding domain-containing protein, at 2,249,111 to 2,250,769
_10640
Group
Condition
IAI47
_10620
IAI47
_10625
IAI47
_10630
IAI47
_10635
IAI47
_10640
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
-0.7
-0.4
+0.1
-0.3
stress
copper (II) chloride 2 uM, anaerobic
+0.2
-0.7
-0.2
-0.2
-0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
-0.3
+0.1
-0.5
-0.4
stress
copper (II) chloride 2 uM, anaerobic
+0.2
-0.8
-0.2
-0.4
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.2
-0.5
-0.2
-0.1
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.3
+0.3
-0.1
-0.4
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-0.3
-0.4
+0.1
+0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.6
+0.0
-0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.6
-0.1
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.2
-0.5
+0.0
-0.3
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.0
-0.5
+0.1
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+0.4
-0.4
-0.1
+0.0
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.8
+0.0
+0.2
+0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+0.1
-0.4
-0.2
+0.1
+0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.5
+0.0
+0.2
-0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
+0.4
-0.1
+0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.8
+0.0
+0.5
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-0.6
+0.1
+0.0
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-0.4
+0.1
+0.1
-0.0
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-0.2
+0.2
-0.4
+0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-0.4
-0.3
-0.0
+0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-0.0
-0.2
+0.2
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.2
-0.2
+0.3
+0.3
stress
copper (II) chloride 2 uM, anaerobic
+0.4
-0.5
+0.2
+0.1
+0.0
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
-0.2
-0.1
-0.0
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.3
+0.3
-0.2
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.4
-0.4
+0.3
+0.2
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.3
+0.4
-0.1
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.6
+0.3
+0.0
-0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.0
+0.4
+0.1
+0.4
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IAI47_10630
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