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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_10385 and IAI47_10390 are separated by 99 nucleotides
IAI47_10390 and IAI47_10395 are separated by 365 nucleotides
IAI47_10395 and IAI47_10400 are separated by 203 nucleotides
IAI47_10400 and IAI47_10405 are separated by 588 nucleotides
IAI47_10385: IAI47_10385 - L-arabinose ABC transporter ATP-binding protein AraG, at 2,200,247 to 2,201,767
_10385
IAI47_10390: IAI47_10390 - arabinose ABC transporter substrate-binding protein, at 2,201,867 to 2,202,850
_10390
IAI47_10395: IAI47_10395 - ribulokinase, at 2,203,216 to 2,204,919
_10395
IAI47_10400: IAI47_10400 - L-arabinose isomerase, at 2,205,123 to 2,206,622
_10400
IAI47_10405: IAI47_10405 - GNAT family N-acetyltransferase, at 2,207,211 to 2,207,678
_10405
Group
Condition
IAI47
_10385
IAI47
_10390
IAI47
_10395
IAI47
_10400
IAI47
_10405
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
-0.1
-0.1
-0.1
-0.4
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.2
-0.1
-0.3
-0.4
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.3
-0.2
-0.2
-0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
+0.1
-0.1
-0.2
-0.3
stress
copper (II) chloride 2 uM, anaerobic
+0.0
-0.4
-0.2
-0.2
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.1
-0.3
-0.4
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.2
-0.2
+0.1
-0.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.3
-0.0
-0.6
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.3
-0.1
+0.1
+0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.3
+0.1
-0.1
-0.5
nitrogen source
Ammonium chloride (N)
+0.0
-0.3
-0.1
+0.4
-0.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.5
-0.1
-0.6
+0.1
carbon source
Ying_sugar7 rep C; time point 2
+0.4
-0.0
+0.2
-0.3
-0.4
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.6
-0.4
-0.4
+0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.3
+0.1
-0.3
-0.4
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.7
+0.0
-0.3
-0.3
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.4
-0.1
-0.1
-0.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.4
+0.0
-0.2
+0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.4
-0.1
-0.2
-0.0
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.4
-0.2
-0.2
-0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
+0.4
-0.4
-0.1
+0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.2
+0.0
-0.1
-0.3
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.4
+0.3
-0.0
-0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.2
+0.1
+0.0
+0.6
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.7
+0.0
-0.0
-0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.5
-0.0
+0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.4
+0.0
+0.1
+0.3
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.7
+0.2
-0.0
+0.0
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.4
+0.1
-0.1
-0.1
stress
copper (II) chloride 2 uM, anaerobic
+0.4
+0.4
+0.1
+0.4
+0.3
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IAI47_10395
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