Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_09440 and IAI47_09445 are separated by 50 nucleotidesIAI47_09445 and IAI47_09450 are separated by 146 nucleotidesIAI47_09450 and IAI47_09455 overlap by 26 nucleotidesIAI47_09455 and IAI47_09460 are separated by 152 nucleotides IAI47_09440: IAI47_09440 - transcriptional regulator TyrR, at 1,992,680 to 1,994,245 _09440 IAI47_09445: IAI47_09445 - thiol peroxidase, at 1,994,296 to 1,994,799 _09445 IAI47_09450: IAI47_09450 - L-Ala-D/L-Glu epimerase, at 1,994,946 to 1,995,929 _09450 IAI47_09455: IAI47_09455 - murein tripeptide amidase MpaA, at 1,995,904 to 1,996,611 _09455 IAI47_09460: IAI47_09460 - peptide ABC transporter substrate-binding protein, at 1,996,764 to 1,998,383 _09460
Group Condition IAI47_09440 IAI47_09445 IAI47_09450 IAI47_09455 IAI47_09460
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 +0.1 -0.4 -0.9 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 -0.7 +0.1 +0.1 -0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 +0.1 -0.2 -0.1 -0.3
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.5 +0.3 -0.6 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 +0.3 -0.5 -0.4 -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 +0.0 +0.3 -0.7 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 +0.2 +0.0 -0.5 -0.0
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 -0.3 +0.0 -0.5 +0.3
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 -0.5 +0.2 -0.5 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.2 +0.1 +0.3 -0.5 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.1 +0.7 -0.2 -0.4 -0.2
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.1 -0.0 +0.4 -0.2 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 +0.5 -0.3 -0.3 -0.0
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.7 -0.2 -0.3 +0.5 -0.0
carbon source Ying_Others16 rep B; time point 3 -0.5 -0.1 -0.3 -0.4 +0.6
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 +0.1 +0.5 -0.4 -0.1
stress copper (II) chloride 2 uM, anaerobic -0.9 -0.1 +0.8 -0.0 -0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 +0.2 +0.2 +0.4 -0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 -0.2 +0.4 +0.4 +0.1
stress copper (II) chloride 2 uM, anaerobic -0.5 +0.7 -0.2 -0.2 +0.3
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 +0.4 +0.2 +0.2 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.6 +0.5 +0.3 -0.2 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.4 -0.2 +0.3 -0.5 -0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.6 +0.2 +0.6 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +1.0 +0.3 +0.2 +0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.4 +0.0 +0.4 -0.0 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.5 +0.5 -0.2 +0.1 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.2 +0.2 +0.5 -0.0 -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.1 +0.3 +0.4 +0.3 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.4 +0.5 +0.4 +0.1 -0.0
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