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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_08750 and IAI47_08755 overlap by 4 nucleotides
IAI47_08755 and IAI47_08760 are separated by 91 nucleotides
IAI47_08760 and IAI47_08765 are separated by 15 nucleotides
IAI47_08765 and IAI47_08770 are separated by 63 nucleotides
IAI47_08750: IAI47_08750 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 1,849,365 to 1,850,174
_08750
IAI47_08755: IAI47_08755 - DUF986 domain-containing protein, at 1,850,171 to 1,850,629
_08755
IAI47_08760: IAI47_08760 - PTS mannose transporter subunit IID, at 1,850,721 to 1,851,566
_08760
IAI47_08765: IAI47_08765 - PTS mannose/fructose/sorbose transporter subunit IIC, at 1,851,582 to 1,852,382
_08765
IAI47_08770: IAI47_08770 - PTS mannose transporter subunit IIAB, at 1,852,446 to 1,853,408
_08770
Group
Condition
IAI47
_08750
IAI47
_08755
IAI47
_08760
IAI47
_08765
IAI47
_08770
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.9
-0.2
-0.4
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.7
-0.8
-0.2
-0.7
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-0.6
-0.4
-0.5
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-1.1
-0.2
-0.8
+0.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.9
-0.2
-0.3
-0.0
survival
Survival; Treatment=UGA synthetic gw pH3.9; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
+0.2
-0.4
-1.0
-0.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.4
-0.3
-0.6
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.1
-0.2
-0.3
-1.0
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.2
-0.2
-0.5
-0.9
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.1
-0.6
-0.1
-0.6
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-0.3
-0.1
-0.6
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+0.1
-0.3
-0.3
-0.7
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.2
+0.1
-1.1
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
-0.3
-0.1
-1.0
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.5
+0.5
-0.8
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-0.1
-0.8
-0.0
-0.4
+0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-0.8
-0.2
-0.0
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
-0.4
+0.2
-0.6
+0.4
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
-0.6
-0.3
-0.2
+0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
-0.3
-0.3
-0.5
+0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
+0.6
+0.1
-0.5
+0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
-0.7
-0.0
-0.0
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
+0.9
-0.3
-0.4
+0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.8
-0.3
+0.7
-0.2
nitrogen source
Ammonium chloride (N)
+0.3
+0.7
+0.1
-0.1
-0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
+0.5
+0.1
+0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.3
+0.4
+0.4
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.5
+0.5
+0.3
+0.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.7
+0.4
-0.0
+0.4
stress
copper (II) chloride 2 uM, anaerobic
+0.4
+0.2
+0.8
+0.3
+0.6
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IAI47_08760
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