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Cofit
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_08605 and IAI47_08610 are separated by 53 nucleotides
IAI47_08610 and IAI47_08615 overlap by 6 nucleotides
IAI47_08615 and IAI47_08620 are separated by 1458 nucleotides
IAI47_08620 and IAI47_08625 are separated by 426 nucleotides
IAI47_08605: IAI47_08605 - hypothetical protein, at 1,817,770 to 1,818,210
_08605
IAI47_08610: IAI47_08610 - tail fiber assembly protein, at 1,818,264 to 1,818,647
_08610
IAI47_08615: IAI47_08615 - phage baseplate assembly protein V, at 1,818,642 to 1,819,010
_08615
IAI47_08620: IAI47_08620 - alcohol dehydrogenase AdhP, at 1,820,469 to 1,821,491
_08620
IAI47_08625: IAI47_08625 - hypothetical protein, at 1,821,918 to 1,822,103
_08625
Group
Condition
IAI47
_08605
IAI47
_08610
IAI47
_08615
IAI47
_08620
IAI47
_08625
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-2.8
-0.2
-0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-1.6
-0.6
-0.2
+0.3
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-1.1
-1.1
-0.6
-0.1
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-1.4
+0.1
-0.6
+0.0
-1.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.6
-0.4
-0.8
+0.1
-0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.5
+0.4
-1.1
-0.2
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.4
-0.6
-1.2
+0.2
-0.6
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
+0.0
-1.3
-0.4
-0.4
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.1
-0.6
-0.7
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.4
-0.5
-0.1
-1.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
-0.4
-1.1
-0.9
+0.2
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.2
-0.4
-0.5
-1.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.7
-0.1
-1.6
-0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.9
-0.2
-0.5
-0.3
-0.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.9
+0.1
+0.0
-0.4
-0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.1
-0.7
-0.2
-1.4
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.6
-0.7
-0.0
-0.9
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.1
-0.4
-0.4
-1.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
-0.2
-0.5
-0.4
-0.8
stress
copper (II) chloride 2 uM, anaerobic
-1.1
-1.1
+0.5
+0.1
+0.6
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
-0.3
-1.1
+0.1
+0.8
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
-1.0
+0.0
+0.1
-0.5
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.5
-0.9
-0.0
-0.6
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.9
-0.3
-1.0
-0.0
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
+0.5
-0.8
+0.3
-0.5
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.2
+0.6
+0.3
+0.2
+0.0
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.2
-0.3
-0.8
+0.4
-0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.0
+0.5
-0.1
-0.1
-0.6
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
-0.7
+0.4
-0.2
+0.6
stress
copper (II) chloride 2 uM, anaerobic
+1.4
-0.3
+0.1
+0.2
-0.2
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