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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_08540 and IAI47_08545 are separated by 869 nucleotides
IAI47_08545 and IAI47_08550 are separated by 17 nucleotides
IAI47_08550 and IAI47_08555 are separated by 54 nucleotides
IAI47_08555 and IAI47_08560 overlap by 1 nucleotides
IAI47_08540: IAI47_08540 - YebY family protein, at 1,807,739 to 1,808,086
_08540
IAI47_08545: IAI47_08545 - hypothetical protein, at 1,808,956 to 1,809,489
_08545
IAI47_08550: IAI47_08550 - hypothetical protein, at 1,809,507 to 1,809,947
_08550
IAI47_08555: IAI47_08555 - tail fiber assembly protein, at 1,810,002 to 1,810,394
_08555
IAI47_08560: IAI47_08560 - phage tail protein, at 1,810,394 to 1,811,626
_08560
Group
Condition
IAI47
_08540
IAI47
_08545
IAI47
_08550
IAI47
_08555
IAI47
_08560
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
-0.4
-0.4
-1.1
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
-0.6
-0.6
-1.1
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.5
-0.2
-0.6
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.7
+0.1
-0.9
-0.8
-0.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
-0.1
-0.9
-0.2
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
-0.3
-0.6
-0.7
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
-0.3
-0.5
-0.6
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.0
-0.5
-0.4
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+0.4
-0.4
-0.5
-0.3
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
-0.5
-0.5
-0.4
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
-0.2
-0.6
-0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
-0.4
-0.4
-0.2
-0.0
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.3
-0.6
+0.3
-0.1
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
-0.4
-0.4
+0.1
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.4
-0.3
-0.3
-0.4
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+0.9
-0.3
-0.7
-0.4
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+0.6
-0.2
-0.2
-0.5
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+0.6
-0.2
-0.3
-0.4
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.0
-0.6
-0.3
-0.2
-0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
+0.1
+0.4
+0.3
-0.3
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.5
-0.3
-0.5
+0.2
-0.0
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
-0.3
+0.3
+0.2
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.6
-0.2
-0.3
-0.4
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.7
-0.1
+0.1
-0.7
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.7
-0.4
-0.1
-0.3
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
-0.1
-0.4
-0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+0.6
+0.2
-0.4
-0.3
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+0.9
+0.1
-0.6
+0.0
+0.0
stress
copper (II) chloride 2 uM, anaerobic
-0.3
-0.1
+1.0
-0.3
+0.5
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.8
+0.1
+0.1
+0.5
-0.2
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IAI47_08550
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