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Cofit
Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_08510 and IAI47_08515 are separated by 125 nucleotides
IAI47_08515 and IAI47_08520 overlap by 7 nucleotides
IAI47_08520 and IAI47_08525 overlap by 4 nucleotides
IAI47_08525 and IAI47_08530 are separated by 151 nucleotides
IAI47_08510: IAI47_08510 - DUF533 domain-containing protein, at 1,802,561 to 1,803,217
_08510
IAI47_08515: IAI47_08515 - prolyl oligopeptidase family serine peptidase, at 1,803,343 to 1,805,406
_08515
IAI47_08520: IAI47_08520 - exodeoxyribonuclease X, at 1,805,400 to 1,806,071
_08520
IAI47_08525: IAI47_08525 - DNA polymerase III subunit theta, at 1,806,068 to 1,806,301
_08525
IAI47_08530: IAI47_08530 - copper homeostasis periplasmic binding protein CopC, at 1,806,453 to 1,806,830
_08530
Group
Condition
IAI47
_08510
IAI47
_08515
IAI47
_08520
IAI47
_08525
IAI47
_08530
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-1.1
-0.1
-0.1
-0.7
+0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
+0.2
-0.1
-0.2
-0.9
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.8
-0.1
-0.3
-0.5
+1.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
-0.2
-0.2
-0.3
+0.5
stress
Uranyl Acetate Dihydrate 200 uM, aerobic
+0.3
-0.1
+0.3
-0.3
-0.7
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.1
+0.3
-0.2
-0.9
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
+0.1
+0.2
+0.4
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.5
-0.3
-0.1
-0.0
+0.6
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
+0.1
+0.5
-0.4
-0.2
stress
copper (II) chloride 2 uM, anaerobic
-0.9
+0.1
+0.2
+0.4
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.1
-0.1
-0.3
+0.7
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
+0.2
+0.2
+0.4
-0.8
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.8
-0.1
+0.1
-0.1
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.5
-0.4
+0.1
+0.1
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.0
+0.1
-0.5
+0.8
stress
copper (II) chloride 2 uM, anaerobic
+0.9
-0.1
+0.1
-0.3
-0.6
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
+0.1
-0.1
-0.2
+0.9
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-0.5
-0.1
+0.1
+0.0
+0.8
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.2
+0.4
-0.5
+0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.1
-0.2
+0.2
-0.4
+0.9
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.2
+0.3
+0.1
+1.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
-0.2
-0.2
+0.2
+0.3
+0.8
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
-0.3
+0.0
+0.1
+1.5
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
+0.1
-0.2
+0.1
+1.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.3
+0.3
-0.1
+0.5
+0.7
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.1
+0.2
-0.1
+1.1
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.0
+0.2
-0.1
+1.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.0
+0.2
-0.2
+1.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.7
+0.2
+0.0
-0.3
+1.2
stress
copper (II) chloride 2 uM, anaerobic
+0.7
+0.4
-0.3
+0.1
+0.9
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