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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_08445 and IAI47_08450 are separated by 8 nucleotides
IAI47_08450 and IAI47_08455 are separated by 0 nucleotides
IAI47_08455 and IAI47_08460 overlap by 4 nucleotides
IAI47_08460 and IAI47_08465 are separated by 77 nucleotides
IAI47_08445: IAI47_08445 - Holliday junction branch migration protein RuvA, at 1,787,985 to 1,788,599
_08445
IAI47_08450: IAI47_08450 - Holliday junction branch migration DNA helicase RuvB, at 1,788,608 to 1,789,612
_08450
IAI47_08455: IAI47_08455 - zinc ABC transporter permease subunit ZnuB, at 1,789,613 to 1,790,398
_08455
IAI47_08460: IAI47_08460 - zinc ABC transporter ATP-binding protein ZnuC, at 1,790,395 to 1,791,150
_08460
IAI47_08465: IAI47_08465 - zinc ABC transporter substrate-binding protein ZnuA, at 1,791,228 to 1,792,175
_08465
Group
Condition
IAI47
_08445
IAI47
_08450
IAI47
_08455
IAI47
_08460
IAI47
_08465
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.2
-2.4
-1.0
-0.6
-0.4
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-4.0
-2.0
-0.1
-0.1
-0.4
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-3.6
-3.3
-0.0
+0.4
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-3.6
-2.5
+0.2
+0.0
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
-2.8
-3.2
-0.1
-0.1
+0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.9
-2.9
-0.2
-0.1
+0.6
carbon source
Ying_AminoAcid20 rep C; time point 3
-2.9
-3.2
-0.0
+0.1
+0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.8
-2.9
-0.3
+0.0
+0.3
stress
Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
-4.8
-1.6
+0.3
+0.2
+0.4
carbon source
Ying_AminoAcid20 rep A; time point 3
-2.8
-3.0
+0.0
+0.1
+0.4
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.9
-2.8
+0.4
-0.1
+0.3
stress
Manganese (II) chloride tetrahydrate 50 uM, anaerobic
-4.5
-0.9
+0.4
-0.2
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
-3.1
-2.2
+0.5
+0.0
+1.0
carbon source
Ying_Others16 rep B; time point 3
-2.9
-2.8
+0.7
+0.9
+1.3
stress
dichromate 5 uM, aerobic
-4.2
-1.0
+0.8
+0.7
+1.1
stress
dichromate 5 uM, aerobic
-3.0
-2.2
+0.7
+0.4
+1.4
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.5
-1.9
+0.5
+0.5
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-3.0
-1.4
+0.6
+0.7
+0.7
carbon source
Ying_Others16 rep A; time point 3
-2.8
-2.2
+1.0
+0.9
+1.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-2.6
-1.2
+0.9
+0.5
+0.9
carbon source
Ying_Others16 rep C; time point 3
-1.5
-2.3
+1.0
+1.0
+1.4
carbon source
Ying_Others16 rep B; time point 2
-1.4
-2.0
+0.8
+0.9
+1.3
stress
Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
-1.6
-1.3
+1.3
+1.1
+1.3
carbon source
Ying_Nucleobase14 rep A; time point 2
-2.5
-1.4
+1.5
+1.6
+1.8
carbon source
Ying_Nucleobase14 rep C; time point 2
-1.5
-1.2
+1.1
+1.3
+1.5
carbon source
Ying_Nucleobase14 rep B; time point 3
-0.9
-2.2
+1.3
+1.4
+1.9
carbon source
Ying_Nucleobase14 rep C; time point 3
-2.8
-1.9
+1.9
+1.9
+2.4
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.3
-0.8
+1.6
+0.7
+1.9
carbon source
Ying_Nucleobase14 rep B; time point 2
-0.3
-1.4
+1.3
+1.4
+1.6
carbon source
Ying_Nucleobase14 rep A; time point 3
-0.9
-1.9
+1.8
+1.7
+2.0
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