Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_08160 and IAI47_08165 are separated by 50 nucleotidesIAI47_08165 and IAI47_08170 are separated by 217 nucleotidesIAI47_08170 and IAI47_08175 are separated by 113 nucleotidesIAI47_08175 and IAI47_08180 overlap by 1 nucleotides IAI47_08160: IAI47_08160 - RNA polymerase sigma factor FliA, at 1,721,491 to 1,722,213 _08160 IAI47_08165: IAI47_08165 - flagella biosynthesis regulatory protein FliZ, at 1,722,264 to 1,722,767 _08165 IAI47_08170: IAI47_08170 - D-cysteine desulfhydrase, at 1,722,985 to 1,723,971 _08170 IAI47_08175: IAI47_08175 - cystine ABC transporter substrate-binding protein, at 1,724,085 to 1,724,885 _08175 IAI47_08180: IAI47_08180 - cystine ABC transporter permease, at 1,724,885 to 1,725,553 _08180
Group Condition IAI47_08160 IAI47_08165 IAI47_08170 IAI47_08175 IAI47_08180
carbon source Ying_all64 rep A; time point 3 +0.8 -3.9 -0.2 -0.1 -0.2
carbon source Ying_all64 rep B; time point 3 +0.4 -3.6 -0.2 +0.0 -0.2
carbon source Ying_AminoAcid20 rep C; time point 3 +0.7 -3.7 +0.0 -0.1 -0.2
carbon source Ying_all64 rep C; time point 2 -0.0 -3.0 -0.1 +0.1 -0.2
carbon source Ying_AminoAcid20 rep B; time point 3 +0.6 -3.5 +0.1 -0.1 -0.3
carbon source Ying_all64 rep A; time point 2 -0.1 -2.6 -0.1 -0.1 -0.2
carbon source Ying_AminoAcid20 rep A; time point 3 +0.7 -3.6 +0.0 -0.1 -0.1
carbon source Ying_all64 rep C; time point 3 +0.6 -3.4 -0.1 -0.1 -0.1
carbon source Ying_AminoAcid20 rep C; time point 2 -0.0 -2.6 -0.1 -0.1 -0.1
carbon source Ying_AminoAcid20 rep B; time point 2 -0.0 -2.8 -0.0 -0.1 +0.0
carbon source Ying_all64 rep B; time point 2 +0.1 -2.7 -0.0 -0.2 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 -2.8 +0.2 -0.1 +0.0
carbon source Ying_Nucleobase14 rep A; time point 3 +0.1 -2.5 -0.1 -0.1 -0.2
carbon source Ying_Nucleobase14 rep C; time point 3 +0.3 -2.7 +0.0 +0.0 -0.2
carbon source Ying_Others16 rep C; time point 3 +0.4 -2.8 +0.2 -0.0 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.9 -3.1 -0.0 -0.1 -0.2
carbon source Ying_sugar7 rep C; time point 3 +0.4 -2.8 -0.0 -0.1 +0.0
carbon source Ying_OrganicAcid7 rep A; time point 3 +1.1 -3.2 -0.2 -0.0 -0.1
carbon source Ying_sugar7 rep B; time point 3 +0.5 -2.7 +0.1 -0.1 -0.1
carbon source Ying_Others16 rep A; time point 3 +0.5 -2.6 +0.1 -0.1 -0.2
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.9 -3.0 +0.0 -0.1 -0.2
carbon source Ying_Others16 rep B; time point 3 +0.4 -2.3 +0.0 -0.0 -0.4
carbon source Ying_OrganicAcid7 rep A; time point 2 +0.6 -2.3 -0.1 -0.1 -0.0
carbon source Ying_sugar7 rep A; time point 3 +0.7 -2.4 -0.1 -0.0 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.9 -2.6 -0.0 +0.0 -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.0 -1.7 -0.1 +0.1 -0.5
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.7 -1.6 +0.2 +0.1 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.9 -1.5 -0.2 -0.0 -0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.8 -1.5 -0.3 +0.1 -0.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 +1.2 -0.3 -0.2 -0.3
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IAI47_08165
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