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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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500 nt
IAI47_08105 and IAI47_08110 are separated by 175 nucleotides
IAI47_08110 and IAI47_08115 are separated by 195 nucleotides
IAI47_08115 and IAI47_08120 are separated by 253 nucleotides
IAI47_08120 and IAI47_08125 are separated by 104 nucleotides
IAI47_08105: IAI47_08105 - DinI family protein, at 1,711,200 to 1,711,439
_08105
IAI47_08110: IAI47_08110 - anti-adapter protein IraP, at 1,711,615 to 1,711,914
_08110
IAI47_08115: IAI47_08115 - hypothetical protein, at 1,712,110 to 1,712,433
_08115
IAI47_08120: IAI47_08120 - lipoprotein, at 1,712,687 to 1,713,160
_08120
IAI47_08125: IAI47_08125 - alpha-amylase, at 1,713,265 to 1,714,746
_08125
Group
Condition
IAI47
_08105
IAI47
_08110
IAI47
_08115
IAI47
_08120
IAI47
_08125
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-3.3
+0.1
-0.2
N.D.
-0.4
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.9
-0.4
+0.4
N.D.
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-2.1
+0.1
-0.1
N.D.
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.1
+0.1
+0.0
N.D.
-0.0
stress
Uranyl Acetate Dihydrate 200 uM, anaerobic
-1.5
-0.3
+0.0
N.D.
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
-1.4
+0.0
-0.1
N.D.
-0.3
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.7
-0.7
-0.3
N.D.
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-1.6
+0.4
-0.2
N.D.
-0.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.4
-0.5
-0.1
N.D.
+0.3
stress
copper (II) chloride 2 uM, anaerobic
-1.7
-0.1
-0.2
N.D.
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.7
+0.2
-0.0
N.D.
-0.1
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.3
+0.2
-0.4
N.D.
-0.1
no stress control
Defined media control, aerobic
-1.6
+0.2
-0.0
N.D.
-0.0
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-1.0
-0.4
N.D.
-0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.4
+0.2
+0.1
N.D.
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-1.3
+0.4
-0.0
N.D.
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
-1.1
+0.6
+0.0
N.D.
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.8
+0.8
+0.1
N.D.
-0.4
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.1
+0.6
+0.3
N.D.
+0.1
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.1
+0.5
+0.0
N.D.
+0.4
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.1
+1.0
+0.1
N.D.
-0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.9
-0.6
-0.4
N.D.
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.7
+0.9
-0.1
N.D.
+0.0
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.8
+0.8
+0.5
N.D.
-0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.1
-0.4
-0.3
N.D.
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.6
+1.4
+0.2
N.D.
-0.3
carbon source
Ying_sugar7 rep B; time point 3
+1.2
+0.2
-0.3
N.D.
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.6
+1.0
+0.3
N.D.
-0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.9
+0.9
-0.5
N.D.
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.7
+0.7
+0.2
N.D.
-0.4
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