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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_07890 and IAI47_07895 are separated by 171 nucleotides
IAI47_07895 and IAI47_07900 are separated by 611 nucleotides
IAI47_07900 and IAI47_07905 are separated by 71 nucleotides
IAI47_07905 and IAI47_07910 are separated by 43 nucleotides
IAI47_07890: IAI47_07890 - DgsA anti-repressor MtfA, at 1,672,793 to 1,673,566
_07890
IAI47_07895: IAI47_07895 - hypothetical protein, at 1,673,738 to 1,674,415
_07895
IAI47_07900: IAI47_07900 - phosphohydrolase, at 1,675,027 to 1,675,731
_07900
IAI47_07905: IAI47_07905 - Arc family DNA-binding protein, at 1,675,803 to 1,676,084
_07905
IAI47_07910: IAI47_07910 - DNA (cytosine-5-)-methyltransferase, at 1,676,128 to 1,677,504
_07910
Group
Condition
IAI47
_07890
IAI47
_07895
IAI47
_07900
IAI47
_07905
IAI47
_07910
stress
Manganese (II) chloride tetrahydrate 50 uM, anaerobic
-0.1
-0.0
-0.1
-4.2
+0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.5
-0.3
+0.3
-1.8
-0.4
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.9
-0.9
+0.2
-1.9
-0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.1
-0.1
-3.5
+0.0
carbon source
Ying_sugar7 rep C; time point 3
-0.4
-2.5
+0.2
-0.0
-0.6
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-1.2
+0.1
-1.8
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
-0.2
-0.1
-3.4
+0.1
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.9
-0.4
+0.1
-3.3
-0.0
stress
Cadmium acetate 8 uM, aerobic
+0.3
+0.1
-0.2
-2.8
+0.2
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.6
-0.2
-0.0
-2.9
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.5
+0.0
-0.5
-2.0
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.7
+0.3
+0.1
-3.2
+0.1
carbon source
Ying_sugar7 rep A; time point 3
+0.2
-2.0
+0.2
+0.4
-0.7
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.4
+0.1
-2.7
+0.4
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.9
-0.3
+0.2
-2.3
+0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.5
-0.8
+0.3
+1.0
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.0
+0.3
-0.3
-3.0
+1.1
carbon source
Ying_sugar7 rep B; time point 3
+0.0
-2.5
+0.3
+2.0
-0.6
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.4
-0.2
-2.0
+0.5
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.7
+0.5
-0.0
-2.5
+0.5
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-1.2
+0.0
+1.5
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50
+0.5
+0.7
-0.2
-1.6
+0.9
carbon source
Ying_all64 rep A; time point 3
+0.6
-1.3
+0.0
+1.3
-0.4
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.5
-0.8
+0.1
+2.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
+0.4
-0.0
-1.3
+0.9
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.1
-0.5
+0.3
+2.3
-0.4
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.7
+0.2
+2.1
+0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.4
+0.3
-0.3
+1.9
+0.7
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.4
+0.0
+0.1
+1.6
+0.3
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.7
+0.2
+2.0
+0.6
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