Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_07205 and IAI47_07210 overlap by 4 nucleotidesIAI47_07210 and IAI47_07215 are separated by 230 nucleotidesIAI47_07215 and IAI47_07220 are separated by 148 nucleotidesIAI47_07220 and IAI47_07225 are separated by 26 nucleotides IAI47_07205: IAI47_07205 - efflux RND transporter periplasmic adaptor subunit, at 1,521,883 to 1,522,980 _07205 IAI47_07210: IAI47_07210 - efflux RND transporter permease subunit, at 1,522,977 to 1,526,072 _07210 IAI47_07215: IAI47_07215 - catalase/peroxidase HPI, at 1,526,303 to 1,528,480 _07215 IAI47_07220: IAI47_07220 - proteasome-type protease, at 1,528,629 to 1,529,360 _07220 IAI47_07225: IAI47_07225 - transglutaminase family protein, at 1,529,387 to 1,530,181 _07225
Group Condition IAI47_07205 IAI47_07210 IAI47_07215 IAI47_07220 IAI47_07225
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 +0.2 -0.1 -0.1 -0.5
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.0 -0.6 -0.1 -0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.0 -0.5 -0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 +0.1 -0.4 +0.1 -0.3
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.0 -0.3 +0.2 +0.0
carbon source Ying_all64 rep B; time point 3 -0.1 +0.2 -0.3 -0.2 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.1 +0.1 -0.4 -0.2
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.1 -0.2 +0.3 -0.2
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 +0.2 -0.1 -0.1 +0.2
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.1 -0.1 +0.2 -0.3
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -0.1 +0.3 -0.3 +0.0
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.1 -0.1 +0.2 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 +0.2 +0.1 -0.4 -0.0 +0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.1 -0.2 +0.2 -0.2
stress Uranyl Acetate Dihydrate 200 uM, aerobic -0.2 +0.2 +0.2 -0.2 +0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.3 -0.1 +0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 -0.1 -0.2 +0.1 +0.2
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 +0.2 -0.3 +0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 +0.1 +0.2 -0.1 -0.1
stress copper (II) chloride 2 uM, anaerobic -0.3 +0.5 +0.3 +0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 +0.2 +0.1 +0.4 +0.1 -0.2
stress copper (II) chloride 2 uM, anaerobic -0.4 +0.5 +0.6 -0.0 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.5 -0.1 +0.1 +0.1 -0.2
carbon source Ying_sugar7 rep C; time point 2 +0.2 +0.2 -0.2 +0.1 +0.2
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.1 +0.1 -0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 +0.2 -0.0 +0.3 -0.1 +0.3
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 +0.1 -0.1 +0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.2 -0.0 +0.1 -0.1 +0.4
stress copper (II) chloride 2 uM, anaerobic +0.2 -0.1 -0.2 +0.4 +0.7
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.2 +0.1 +0.4 +0.2
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