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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_07205 and IAI47_07210 overlap by 4 nucleotides
IAI47_07210 and IAI47_07215 are separated by 230 nucleotides
IAI47_07215 and IAI47_07220 are separated by 148 nucleotides
IAI47_07220 and IAI47_07225 are separated by 26 nucleotides
IAI47_07205: IAI47_07205 - efflux RND transporter periplasmic adaptor subunit, at 1,521,883 to 1,522,980
_07205
IAI47_07210: IAI47_07210 - efflux RND transporter permease subunit, at 1,522,977 to 1,526,072
_07210
IAI47_07215: IAI47_07215 - catalase/peroxidase HPI, at 1,526,303 to 1,528,480
_07215
IAI47_07220: IAI47_07220 - proteasome-type protease, at 1,528,629 to 1,529,360
_07220
IAI47_07225: IAI47_07225 - transglutaminase family protein, at 1,529,387 to 1,530,181
_07225
Group
Condition
IAI47
_07205
IAI47
_07210
IAI47
_07215
IAI47
_07220
IAI47
_07225
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.6
+0.2
-0.1
-0.1
-0.5
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.0
-0.6
-0.1
-0.3
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
+0.0
-0.5
-0.4
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.1
-0.4
+0.1
-0.3
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.4
+0.0
-0.3
+0.2
+0.0
carbon source
Ying_all64 rep B; time point 3
-0.1
+0.2
-0.3
-0.2
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.1
+0.1
-0.4
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.1
-0.2
+0.3
-0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
+0.2
-0.1
-0.1
+0.2
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.1
-0.1
+0.2
-0.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.1
+0.3
-0.3
+0.0
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.1
-0.1
+0.2
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50
+0.2
+0.1
-0.4
-0.0
+0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.1
-0.2
+0.2
-0.2
stress
Uranyl Acetate Dihydrate 200 uM, aerobic
-0.2
+0.2
+0.2
-0.2
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.3
-0.1
+0.1
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-0.1
-0.2
+0.1
+0.2
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
+0.2
-0.3
+0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.1
+0.2
-0.1
-0.1
stress
copper (II) chloride 2 uM, anaerobic
-0.3
+0.5
+0.3
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+0.2
+0.1
+0.4
+0.1
-0.2
stress
copper (II) chloride 2 uM, anaerobic
-0.4
+0.5
+0.6
-0.0
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.5
-0.1
+0.1
+0.1
-0.2
carbon source
Ying_sugar7 rep C; time point 2
+0.2
+0.2
-0.2
+0.1
+0.2
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.1
+0.1
-0.1
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
+0.2
-0.0
+0.3
-0.1
+0.3
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.1
-0.1
+0.4
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+0.2
-0.0
+0.1
-0.1
+0.4
stress
copper (II) chloride 2 uM, anaerobic
+0.2
-0.1
-0.2
+0.4
+0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.2
+0.1
+0.4
+0.2
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IAI47_07215
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IAI47_07225
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