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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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500 nt
IAI47_06280 and IAI47_06285 are separated by 259 nucleotides
IAI47_06285 and IAI47_06290 are separated by 178 nucleotides
IAI47_06290 and IAI47_06295 overlap by 8 nucleotides
IAI47_06295 and IAI47_06300 are separated by 8 nucleotides
IAI47_06280: IAI47_06280 - UbiX family flavin prenyltransferase, at 1,277,411 to 1,277,980
_06280
IAI47_06285: IAI47_06285 - lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT, at 1,278,240 to 1,279,022
_06285
IAI47_06290: IAI47_06290 - histidine ABC transporter permease HisQ, at 1,279,201 to 1,279,890
_06290
IAI47_06295: IAI47_06295 - ABC transporter permease, at 1,279,883 to 1,280,599
_06295
IAI47_06300: IAI47_06300 - histidine ABC transporter ATP-binding protein HisP, at 1,280,608 to 1,281,381
_06300
Group
Condition
IAI47
_06280
IAI47
_06285
IAI47
_06290
IAI47
_06295
IAI47
_06300
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-1.0
-0.3
-0.5
-0.7
carbon source
Ying_Others16 rep B; time point 3
N.D.
-0.3
-0.3
-0.5
-0.7
carbon source
Ying_Others16 rep C; time point 3
N.D.
-0.5
-0.2
-0.4
-0.8
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.8
-0.2
-0.3
-0.5
carbon source
Ying_Others16 rep A; time point 3
N.D.
-0.4
-0.2
-0.5
-0.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.0
-0.3
-0.3
-0.6
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.3
-0.4
-0.2
-0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.1
-0.2
-0.3
-0.5
carbon source
Ying_Others16 rep C; time point 2
N.D.
-0.4
-0.2
-0.3
-0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.1
-0.1
-0.4
-0.7
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50
N.D.
-0.1
-0.1
-0.3
-0.6
carbon source
Ying_Others16 rep A; time point 2
N.D.
-0.3
+0.1
-0.3
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
N.D.
+0.1
-0.0
-0.4
-0.6
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.3
-0.6
-0.1
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.1
+0.2
-0.2
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.4
-0.1
-0.4
-0.5
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
N.D.
+0.1
+0.2
-0.2
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
-0.0
+0.3
-0.4
-0.4
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.0
+0.3
-0.2
-0.7
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.4
-0.1
-0.3
-0.5
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.3
+0.1
-0.1
-0.8
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.4
+0.0
-0.4
-0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.4
-0.2
-0.2
-0.4
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
N.D.
+0.2
+0.2
-0.1
-0.6
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
-0.1
+0.5
-0.1
-0.5
stress
copper (II) chloride 2 uM, anaerobic
N.D.
-0.3
+0.3
+0.0
+0.6
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
N.D.
+0.5
-0.0
-0.3
+0.4
carbon source
Ying_OrganicAcid7 rep C; time point 3
N.D.
+0.5
+0.4
+0.2
-0.1
carbon source
Ying_OrganicAcid7 rep B; time point 3
N.D.
+0.2
+0.6
+0.2
+0.2
carbon source
Ying_OrganicAcid7 rep A; time point 3
N.D.
+0.4
+0.5
+0.4
+0.5
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