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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_05580 and IAI47_05585 are separated by 203 nucleotides
IAI47_05585 and IAI47_05590 are separated by 2 nucleotides
IAI47_05590 and IAI47_05595 are separated by 149 nucleotides
IAI47_05595 and IAI47_05600 are separated by 13 nucleotides
IAI47_05580: IAI47_05580 - membrane protein YpdK, at 1,175,280 to 1,175,354
_05580
IAI47_05585: IAI47_05585 - HlyD family secretion protein, at 1,175,558 to 1,176,586
_05585
IAI47_05590: IAI47_05590 - MFS transporter, at 1,176,589 to 1,178,187
_05590
IAI47_05595: IAI47_05595 - IclR family transcriptional regulator, at 1,178,337 to 1,179,116
_05595
IAI47_05600: IAI47_05600 - universal stress protein, at 1,179,130 to 1,179,582
_05600
Group
Condition
IAI47
_05580
IAI47
_05585
IAI47
_05590
IAI47
_05595
IAI47
_05600
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.7
-0.2
+0.0
-1.0
-0.4
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-4.0
+0.0
+0.3
-0.4
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-3.9
-0.0
+0.3
-0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.7
-0.1
-0.0
-0.5
-0.2
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-3.1
-0.1
+0.2
-0.3
-0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.3
-0.1
+0.2
-1.0
+0.1
no stress control
Defined media control, aerobic
-2.7
-0.1
-0.0
-0.1
+0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.9
-0.2
-0.3
-0.9
-0.4
no stress control
Defined media control, aerobic
-2.8
-0.2
+0.3
-0.3
+0.3
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.8
-0.1
-0.4
-0.3
-0.0
stress
Manganese (II) chloride tetrahydrate 50 uM, aerobic
-2.0
+0.2
-0.1
-0.2
-0.3
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.1
-0.2
-0.2
-0.8
-0.1
stress
Nickel (II) chloride 20 uM, anaerobic
-2.4
-0.1
+0.1
-0.1
+0.0
stress
copper (II) chloride 2 uM, anaerobic
-2.2
+0.1
+0.1
+0.4
-0.3
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.9
+0.0
+0.3
-0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.8
+0.3
-0.1
+0.1
-0.1
carbon source
Ying_sugar7 rep C; time point 2
-1.8
-0.1
+0.3
+0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.9
-0.1
+0.0
+0.4
+0.0
stress
copper (II) chloride 2 uM, anaerobic
-2.1
+0.5
-0.1
+0.5
-0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.2
-0.1
-0.0
+0.3
+0.7
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.2
-0.1
+0.6
-0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.7
+0.3
-0.3
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.5
+0.1
+0.1
+0.8
-0.6
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+1.5
+0.0
+0.2
+0.5
-0.2
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.7
+0.1
+0.2
-0.1
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+1.1
+0.2
-0.2
+0.7
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
+1.7
-0.1
+0.4
+0.3
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.0
-0.0
+0.3
+1.1
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+2.5
-0.1
+0.1
-0.0
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
+2.7
+0.2
-0.0
+0.5
-0.4
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