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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_05565 and IAI47_05570 are separated by 251 nucleotides
IAI47_05570 and IAI47_05575 are separated by 117 nucleotides
IAI47_05575 and IAI47_05580 are separated by 51 nucleotides
IAI47_05580 and IAI47_05585 are separated by 203 nucleotides
IAI47_05565: IAI47_05565 - sensor histidine kinase, at 1,171,414 to 1,173,102
_05565
IAI47_05570: IAI47_05570 - GNAT family N-acetyltransferase, at 1,173,354 to 1,173,878
_05570
IAI47_05575: IAI47_05575 - alanine transaminase, at 1,173,996 to 1,175,228
_05575
IAI47_05580: IAI47_05580 - membrane protein YpdK, at 1,175,280 to 1,175,354
_05580
IAI47_05585: IAI47_05585 - HlyD family secretion protein, at 1,175,558 to 1,176,586
_05585
Group
Condition
IAI47
_05565
IAI47
_05570
IAI47
_05575
IAI47
_05580
IAI47
_05585
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.4
-0.1
+0.4
-4.0
+0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.1
+0.2
-3.9
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-0.1
-0.2
-2.7
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.1
+0.0
-3.1
-0.1
no stress control
Defined media control, aerobic
-0.2
+0.1
-0.1
-2.8
-0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.2
+0.1
-2.7
-0.2
no stress control
Defined media control, aerobic
+0.0
-0.1
+0.1
-2.7
-0.1
carbon source
Ying_sugar7 rep C; time point 2
-0.2
-0.3
-0.0
-1.8
-0.1
stress
Nickel (II) chloride 20 uM, anaerobic
+0.1
+0.1
-0.1
-2.4
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.2
-0.0
-1.8
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
-0.1
-0.1
-1.8
-0.1
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.1
-0.3
-1.9
+0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
+0.2
+0.1
-2.3
-0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.0
+0.0
-2.2
-0.1
stress
Manganese (II) chloride tetrahydrate 50 uM, aerobic
-0.1
-0.1
-0.0
-2.0
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.2
+0.1
-0.1
-1.9
-0.1
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.2
-0.1
-1.5
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.0
+0.1
-0.3
-1.6
-0.1
stress
copper (II) chloride 1 uM, anaerobic
+0.1
+0.1
-0.3
-1.7
-0.0
stress
copper (II) chloride 2 uM, anaerobic
+0.1
-0.0
+0.3
-2.2
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50
-0.1
+0.1
+0.1
-1.9
+0.1
stress
copper (II) chloride 2 uM, anaerobic
+0.4
-0.1
-0.2
-2.1
+0.5
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
+0.2
-0.2
-1.8
+0.3
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.4
+0.2
-0.0
+1.7
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
-0.2
+0.2
+0.4
+1.1
+0.2
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.2
+0.0
+0.0
+1.7
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
-0.1
+0.2
+0.4
+1.2
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.5
-0.1
+1.7
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.2
+0.4
+2.5
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-0.1
+0.2
+0.3
+2.7
+0.2
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