Fitness for 5 genes in Pantoea sp. MT58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 309 experiments or choose conditions or try the comparative fitness browser

500 ntIAI47_05560 and IAI47_05565 overlap by 4 nucleotidesIAI47_05565 and IAI47_05570 are separated by 251 nucleotidesIAI47_05570 and IAI47_05575 are separated by 117 nucleotidesIAI47_05575 and IAI47_05580 are separated by 51 nucleotides IAI47_05560: IAI47_05560 - response regulator transcription factor, at 1,170,689 to 1,171,417 _05560 IAI47_05565: IAI47_05565 - sensor histidine kinase, at 1,171,414 to 1,173,102 _05565 IAI47_05570: IAI47_05570 - GNAT family N-acetyltransferase, at 1,173,354 to 1,173,878 _05570 IAI47_05575: IAI47_05575 - alanine transaminase, at 1,173,996 to 1,175,228 _05575 IAI47_05580: IAI47_05580 - membrane protein YpdK, at 1,175,280 to 1,175,354 _05580
Group Condition IAI47_05560 IAI47_05565 IAI47_05570 IAI47_05575 IAI47_05580
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.4 -0.1 +0.4 -4.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.1 -0.1 +0.2 -3.9
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.1 -0.1 -0.2 -2.7
no stress control Defined media control, aerobic -0.2 -0.2 +0.1 -0.1 -2.8
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.0 -0.1 +0.0 -3.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.1 -0.2 +0.1 -2.7
carbon source Ying_sugar7 rep C; time point 2 -0.4 -0.2 -0.3 -0.0 -1.8
no stress control Defined media control, aerobic -0.1 +0.0 -0.1 +0.1 -2.7
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic -0.2 -0.1 -0.1 -0.0 -2.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.2 -0.1 -0.1 -1.8
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.1 +0.1 -0.3 -1.9
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.3 -0.2 -0.0 -1.8
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.1 +0.2 +0.1 -2.3
stress Nickel (II) chloride 20 uM, anaerobic +0.1 +0.1 +0.1 -0.1 -2.4
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.1 +0.0 +0.0 -2.2
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.2 -0.4 +0.0 -1.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.2 +0.1 -0.1 -1.9
stress copper (II) chloride 2 uM, anaerobic +0.0 +0.1 -0.0 +0.3 -2.2
stress copper (II) chloride 2 uM, anaerobic +0.2 +0.4 -0.1 -0.2 -2.1
stress copper (II) chloride 1 uM, anaerobic +0.0 +0.1 +0.1 -0.3 -1.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 +0.1 -0.1 +0.1 +0.1 -1.9
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 +0.3 +0.2 -0.2 -1.8
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.5 -0.3 +0.0 -0.1 +1.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 -0.3 -0.2 -0.2 +0.3 +1.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.3 -0.4 +0.2 -0.0 +1.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.3 -0.2 -0.1 +0.2 +1.5
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.2 +0.0 +0.0 +1.7
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.1 +0.5 -0.1 +1.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 -0.3 -0.1 +0.2 +0.3 +2.7
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.2 -0.2 +0.4 +2.5
remove
IAI47_05560
plot		 remove
IAI47_05565
plot		 remove
IAI47_05570		 remove
IAI47_05575
plot		 remove
IAI47_05580
plot