Fitness for 5 genes in Pantoea sp. MT58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 309 experiments or choose conditions or try the comparative fitness browser

500 ntIAI47_05545 and IAI47_05550 are separated by 219 nucleotidesIAI47_05550 and IAI47_05555 are separated by 160 nucleotidesIAI47_05555 and IAI47_05560 are separated by 166 nucleotidesIAI47_05560 and IAI47_05565 overlap by 4 nucleotides IAI47_05545: IAI47_05545 - L-glyceraldehyde 3-phosphate reductase, at 1,166,535 to 1,167,524 _05545 IAI47_05550: IAI47_05550 - indolepyruvate decarboxylase, at 1,167,744 to 1,169,396 _05550 IAI47_05555: IAI47_05555 - glucokinase, at 1,169,557 to 1,170,522 _05555 IAI47_05560: IAI47_05560 - response regulator transcription factor, at 1,170,689 to 1,171,417 _05560 IAI47_05565: IAI47_05565 - sensor histidine kinase, at 1,171,414 to 1,173,102 _05565
Group Condition IAI47_05545 IAI47_05550 IAI47_05555 IAI47_05560 IAI47_05565
carbon source Ying_sugar7 rep C; time point 2 -0.3 +0.1 -0.8 -0.4 -0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 -0.2 -0.2 -0.3 -0.0
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.3 -0.1 -0.5 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.2 -0.1 +0.1 -0.3 -0.4
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -0.2 +0.4 -0.3 -0.3
carbon source Ying_sugar7 rep B; time point 3 -0.3 -0.1 -0.3 -0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.1 +0.1 -0.4 -0.2
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.2 -0.2 -0.4 -0.2
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.0 +0.1 -0.2 -0.4
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.1 -0.4 +0.2 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 +0.1 +0.1 -0.3 -0.2
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 +0.1 -0.3 +0.1 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.2 +0.2 -0.0 -0.3 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.1 -0.1 -0.3 -0.5
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.2 -0.2 -0.2 -0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.2 +0.2 -0.3 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.3 +0.3 -0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 +0.3 +0.1 -0.3 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.1 +0.1 -0.3 -0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.2 -0.3 +0.3 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.1 +0.3 +0.0 -0.3 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.3 +0.3 -0.3 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.2 +0.4 -0.1 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.1 +0.5 +0.0 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.2 +0.4 -0.4 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 -0.0 +0.6 -0.1 -0.2
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 -0.1 +0.3 -0.0 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.1 +0.5 +0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.3 +0.3 +0.1 +0.1
stress copper (II) chloride 2 uM, anaerobic +0.4 -0.2 +0.1 +0.2 +0.4
remove
IAI47_05545
plot		 remove
IAI47_05550
plot		 remove
IAI47_05555		 remove
IAI47_05560
plot		 remove
IAI47_05565
plot