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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_05325 and IAI47_05330 are separated by 280 nucleotides
IAI47_05330 and IAI47_05335 are separated by 144 nucleotides
IAI47_05335 and IAI47_05340 are separated by 189 nucleotides
IAI47_05340 and IAI47_05345 overlap by 4 nucleotides
IAI47_05325: IAI47_05325 - DUF1471 domain-containing protein, at 1,127,545 to 1,127,817
_05325
IAI47_05330: IAI47_05330 - L-asparagine permease, at 1,128,098 to 1,129,594
_05330
IAI47_05335: IAI47_05335 - GDP-mannose pyrophosphatase NudK, at 1,129,739 to 1,130,317
_05335
IAI47_05340: IAI47_05340 - DUF1176 domain-containing protein, at 1,130,507 to 1,131,580
_05340
IAI47_05345: IAI47_05345 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 1,131,577 to 1,132,740
_05345
Group
Condition
IAI47
_05325
IAI47
_05330
IAI47
_05335
IAI47
_05340
IAI47
_05345
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.9
+0.2
-0.5
-0.4
-0.3
stress
Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
-2.2
-0.0
-0.1
-0.2
-0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.9
-0.2
-0.0
-0.2
+0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.0
+0.1
-0.1
-0.2
+0.2
carbon source
Ying_AminoAcid20 rep B; time point 2
-0.4
-1.4
-0.0
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.7
-0.0
+0.2
-0.3
+0.0
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.6
+0.0
+0.0
-0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
-1.3
-0.0
-0.3
-0.0
-0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-2.1
+0.1
+0.3
-0.1
+0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.5
+0.0
+0.1
-0.3
+0.0
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.0
-0.2
-0.2
-0.3
+0.1
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.7
+0.2
+0.1
-0.1
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50
-1.2
+0.1
-0.1
-0.1
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-0.7
+0.1
-0.3
-0.3
-0.3
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
-1.3
-0.0
-0.2
-0.1
+0.1
survival
Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.8
+0.2
+0.1
-0.1
+0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.1
+0.2
+0.1
-0.3
-0.1
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.1
-1.7
+0.0
+0.2
+0.0
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.8
+0.1
+0.3
-0.0
+0.1
stress
Uranyl Acetate Dihydrate 200 uM, anaerobic
-1.3
+0.2
+0.1
-0.2
+0.1
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.1
-0.1
+0.2
-0.3
+0.1
carbon source
Ying_AminoAcid20 rep A; time point 2
+0.5
-1.4
-0.1
+0.1
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.6
-1.7
-0.0
+0.3
+0.0
stress
copper (II) chloride 2 uM, anaerobic
-1.0
+0.3
+0.2
-0.5
+0.1
stress
Manganese (II) chloride tetrahydrate 50 uM, anaerobic
-1.0
+0.2
+0.2
-0.3
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
-1.1
+0.6
-0.2
-0.1
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.6
-1.5
-0.0
+0.2
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.8
+0.4
-0.1
-0.1
+0.3
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+1.4
+0.2
-0.3
+0.0
+0.2
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+1.1
+0.4
-0.1
+0.4
-0.0
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