Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_05020 and IAI47_05025 are separated by 146 nucleotidesIAI47_05025 and IAI47_05030 are separated by 3 nucleotidesIAI47_05030 and IAI47_05035 are separated by 175 nucleotidesIAI47_05035 and IAI47_05040 are separated by 186 nucleotides IAI47_05020: IAI47_05020 - 3-mercaptopyruvate sulfurtransferase, at 1,054,911 to 1,055,753 _05020 IAI47_05025: IAI47_05025 - alpha-2-macroglobulin family protein, at 1,055,900 to 1,060,795 _05025 IAI47_05030: IAI47_05030 - peptidoglycan glycosyltransferase PbpC, at 1,060,799 to 1,063,135 _05030 IAI47_05035: IAI47_05035 - nucleoside-diphosphate kinase, at 1,063,311 to 1,063,742 _05035 IAI47_05040: IAI47_05040 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 1,063,929 to 1,065,098 _05040
Group Condition IAI47_05020 IAI47_05025 IAI47_05030 IAI47_05035 IAI47_05040
carbon source Ying_AminoAcid20 rep A; time point 3 -0.1 +0.0 -0.2 -3.5 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 -0.0 -0.1 -3.1 -0.0
carbon source Ying_all64 rep A; time point 3 -0.0 -0.1 -0.2 -3.3 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 -0.1 +0.2 -0.1 -3.1 -0.5
carbon source Ying_Others16 rep C; time point 3 -0.0 +0.0 -0.2 -3.2 -0.3
carbon source Ying_AminoAcid20 rep B; time point 3 -0.2 +0.0 -0.1 -3.0 -0.3
carbon source Ying_Others16 rep A; time point 3 -0.2 +0.0 -0.1 -3.4 +0.0
carbon source Ying_Others16 rep B; time point 2 -0.0 -0.0 +0.0 -3.5 +0.0
carbon source Ying_Nucleobase14 rep B; time point 3 +0.0 -0.0 -0.1 -3.3 +0.0
carbon source Ying_Others16 rep B; time point 3 -0.1 +0.0 -0.0 -3.1 -0.1
carbon source Ying_all64 rep C; time point 3 -0.3 -0.0 -0.1 -2.8 -0.1
carbon source Ying_Nucleobase14 rep A; time point 3 +0.1 +0.0 -0.3 -3.0 -0.0
carbon source Ying_all64 rep B; time point 2 -0.1 +0.0 +0.1 -2.8 -0.3
carbon source Ying_AminoAcid20 rep C; time point 3 -0.2 +0.0 -0.1 -2.7 -0.2
no stress control Defined media control, aerobic +0.1 -0.2 -0.3 -2.4 -0.3
carbon source Ying_all64 rep C; time point 2 -0.1 -0.0 +0.1 -3.1 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.1 -0.1 -2.4 -0.3
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.1 -0.2 -2.1 -0.3
carbon source Ying_Nucleobase14 rep C; time point 2 +0.1 -0.0 -0.0 -2.8 -0.1
carbon source Ying_all64 rep B; time point 3 +0.1 +0.1 -0.1 -3.0 +0.0
carbon source Ying_Others16 rep A; time point 1 +0.1 -0.0 -0.1 -2.8 +0.1
carbon source Ying_Others16 rep C; time point 2 +0.0 -0.0 +0.2 -2.8 +0.0
carbon source Ying_AminoAcid20 rep C; time point 2 +0.0 -0.0 +0.1 -2.8 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.1 +0.3 -2.3 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 -0.3 +0.2 +0.2 -2.1 -0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 +0.3 +0.4 -2.5 +0.2
stress copper (II) chloride 2 uM, anaerobic +0.4 -0.1 -0.1 -2.2 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 +0.3 +0.2 -1.8 -0.5
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.2 +0.1 -1.9 +0.8
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 +0.2 +0.3 -2.2 +0.6
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IAI47_05020
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IAI47_05025
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IAI47_05035
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IAI47_05040
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