Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_04230 and IAI47_04235 are separated by 57 nucleotidesIAI47_04235 and IAI47_04240 are separated by 128 nucleotidesIAI47_04240 and IAI47_04245 are separated by 304 nucleotidesIAI47_04245 and IAI47_04250 are separated by 295 nucleotides IAI47_04230: IAI47_04230 - murein hydrolase activator NlpD, at 887,130 to 888,230 _04230 IAI47_04235: IAI47_04235 - RNA polymerase sigma factor RpoS, at 888,288 to 889,280 _04235 IAI47_04240: IAI47_04240 - DNA mismatch repair protein MutS, at 889,409 to 891,970 _04240 IAI47_04245: IAI47_04245 - two-component system response regulator NarL, at 892,275 to 892,943 _04245 IAI47_04250: IAI47_04250 - NarK family nitrate/nitrite MFS transporter, at 893,239 to 894,630 _04250
Group Condition IAI47_04230 IAI47_04235 IAI47_04240 IAI47_04245 IAI47_04250
carbon source Ying_all64 rep A; time point 3 N.D. -2.5 -0.1 -0.1 -0.1
carbon source Ying_all64 rep B; time point 3 N.D. -2.7 -0.0 +0.0 +0.1
carbon source Ying_all64 rep C; time point 2 N.D. -2.4 -0.0 +0.0 -0.0
carbon source Ying_all64 rep C; time point 3 N.D. -2.7 -0.1 +0.3 +0.2
carbon source Ying_all64 rep B; time point 2 N.D. -2.5 +0.0 +0.2 -0.0
carbon source Ying_all64 rep A; time point 2 N.D. -2.0 -0.1 -0.1 +0.1
no stress control Defined media control, anaerobic N.D. +0.0 +0.1 -1.1 -1.1
stress Uranyl Acetate Dihydrate 200 uM, anaerobic N.D. +0.1 -0.0 -1.2 -1.0
stress Manganese (II) chloride tetrahydrate 50 uM, anaerobic N.D. +0.2 -0.0 -1.4 -0.8
stress Uranyl Acetate Dihydrate 200 uM, anaerobic N.D. +0.2 -0.1 -1.0 -0.9
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -1.0 -0.3 -0.4 -0.2
no stress control Defined media control, anaerobic N.D. +0.2 +0.0 -1.1 -0.7
stress Manganese (II) chloride tetrahydrate 50 uM, anaerobic N.D. +0.3 -0.1 -0.7 -1.0
stress Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic N.D. +0.3 -0.0 -0.8 -0.9
no stress control Defined media control, anaerobic N.D. +0.2 +0.0 -0.8 -0.8
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +1.3 -0.2 -0.5 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +1.2 -0.3 -0.4 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +1.2 +0.0 -0.6 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +1.3 -0.3 -0.5 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +1.5 -0.2 -0.3 +0.0
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.1 +0.1 -0.3 +1.7
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.1 -0.1 -0.5 +2.0
carbon source Ying_Others16 rep C; time point 3 N.D. +2.5 -0.0 -0.0 +0.0
nitrogen source TNT (N) N.D. +2.8 -0.1 +0.0 -0.1
carbon source Ying_Others16 rep A; time point 3 N.D. +2.6 -0.0 +0.1 +0.1
carbon source Ying_Others16 rep B; time point 3 N.D. +2.8 -0.0 +0.0 -0.0
nitrogen source TNT (N) N.D. +3.1 +0.0 -0.0 +0.0
nitrogen source TNT (N) N.D. +3.1 -0.0 +0.1 -0.0
nitrogen source TNT (N) N.D. +2.9 +0.0 +0.3 -0.0
nitrogen source Ammonium chloride (N) N.D. +2.9 +0.1 +0.4 +0.0
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IAI47_04235
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