Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_04025 and IAI47_04030 are separated by 50 nucleotidesIAI47_04030 and IAI47_04035 overlap by 8 nucleotidesIAI47_04035 and IAI47_04040 are separated by 24 nucleotidesIAI47_04040 and IAI47_04045 are separated by 34 nucleotides IAI47_04025: IAI47_04025 - transcriptional regulator GcvA, at 841,977 to 842,894 _04025 IAI47_04030: IAI47_04030 - DUF423 domain-containing protein, at 842,945 to 843,340 _04030 IAI47_04035: IAI47_04035 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 843,333 to 844,433 _04035 IAI47_04040: IAI47_04040 - flap endonuclease Xni, at 844,458 to 845,213 _04040 IAI47_04045: IAI47_04045 - LOG family protein, at 845,248 to 846,612 _04045
Group Condition IAI47_04025 IAI47_04030 IAI47_04035 IAI47_04040 IAI47_04045
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.2 +0.3 -0.5 -2.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 +0.3 -0.0 -0.1 -1.8
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.3 +0.4 +0.0 -1.8
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 +0.2 -0.1 -0.3 -0.4
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 +0.6 +0.4 -0.2 -1.9
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.2 -0.4 -0.3 -0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -0.0 -0.3 -0.2 -0.5
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 -0.1 -0.0 +0.2 -0.7
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 +0.1 +0.1 +0.1 -0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.8 +0.5 -0.2 -1.9
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 +0.2 -0.2 +0.3 -0.4
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 +0.2 +0.2 -0.2 +0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 +0.1 +0.1 +0.1 +0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.1 -0.0 +0.1 +0.6 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 +0.4 +0.3 -0.1 +0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 +0.4 +0.1 +0.0 +0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 +0.5 +0.2 +0.0 +0.1
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 +0.3 +0.4 +0.1 -0.2
nitrogen source nitrogen source nitrite 1mM -0.6 +0.5 +0.1 +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 +0.0 +0.2 +0.3 +0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.9 -0.0 -0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 -0.1 -0.1 +0.3 +0.4 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.5 +0.1 +0.5 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.4 +0.1 -0.2 +1.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.5 +0.8 -0.1 +0.1 +0.0
carbon source Ying_Others16 rep A; time point 3 +1.4 -0.1 +0.1 -0.2 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 +0.8 +0.2 -0.0 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 +0.7 +0.3 -0.0 +0.1
carbon source Ying_Others16 rep B; time point 3 +1.5 +0.1 +0.1 -0.0 +0.1
carbon source Ying_Others16 rep C; time point 3 +1.5 +0.1 +0.1 +0.1 +0.1
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IAI47_04045
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