Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_04005 and IAI47_04010 overlap by 22 nucleotidesIAI47_04010 and IAI47_04015 are separated by 2 nucleotidesIAI47_04015 and IAI47_04020 are separated by 209 nucleotidesIAI47_04020 and IAI47_04025 are separated by 335 nucleotides IAI47_04005: IAI47_04005 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 838,753 to 839,565 _04005 IAI47_04010: IAI47_04010 - cysteine desulfurase sulfur acceptor subunit CsdE, at 839,544 to 839,999 _04010 IAI47_04015: IAI47_04015 - cysteine desulfurase CsdA, at 840,002 to 841,210 _04015 IAI47_04020: IAI47_04020 - YgdI/YgdR family lipoprotein, at 841,420 to 841,641 _04020 IAI47_04025: IAI47_04025 - transcriptional regulator GcvA, at 841,977 to 842,894 _04025
Group Condition IAI47_04005 IAI47_04010 IAI47_04015 IAI47_04020 IAI47_04025
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.5 -0.0 -0.6 +0.0
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 -0.2 -0.1 -0.2 -0.4
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.8 -0.1 +0.1 +0.1 -0.6
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.2 -0.0 -0.2 -0.9
nitrogen source Ammonium chloride (N) -0.3 -0.6 -0.4 +0.0 +0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -0.2 -0.0 +0.1 -1.0
nitrogen source nitrogen source nitrate 5mM -0.4 -0.4 +0.2 -0.1 -0.4
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.2 -0.0 +0.0 -0.9
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.3 -0.0 +0.2 -0.7
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 -0.2 +0.0 +0.3 -0.7
stress copper (II) chloride 2 uM, anaerobic -0.4 -0.3 -0.2 +0.4 -0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.2 -0.4 +0.4 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 -0.2 +0.3 +0.2 -0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 +0.1 +0.2 +0.2 -1.0
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 -0.3 +0.2 +0.2 -0.8
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.2 +0.2 +0.3 -1.0
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.5 -0.2 +0.3 -1.1
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.4 -0.5 +0.7 +0.2 -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.2 +0.5 +0.0 -0.4
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 +0.3 +0.2 +0.2 -0.4
carbon source Ying_Others16 rep B; time point 2 -0.0 -0.1 +0.2 -0.2 +0.8
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.5 +0.5 -0.3 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 +0.1 +0.7 -0.2 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 -0.0 +0.6 -0.0 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 +0.3 +0.8 +0.0 +0.3
carbon source Ying_Others16 rep C; time point 2 -0.1 +0.5 +0.4 +0.0 +0.9
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 +0.5 +0.4 +0.2 +0.3
carbon source Ying_Others16 rep B; time point 3 +0.3 +0.4 +0.2 -0.1 +1.5
carbon source Ying_Others16 rep A; time point 3 +0.2 +0.4 +0.2 +0.1 +1.4
carbon source Ying_Others16 rep C; time point 3 +0.3 +0.3 +0.3 -0.1 +1.5
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IAI47_04005
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IAI47_04010
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IAI47_04020
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IAI47_04025
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