Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_02755 and IAI47_02760 are separated by 130 nucleotidesIAI47_02760 and IAI47_02765 are separated by 102 nucleotidesIAI47_02765 and IAI47_02770 are separated by 62 nucleotidesIAI47_02770 and IAI47_02775 are separated by 294 nucleotides IAI47_02755: IAI47_02755 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 571,493 to 572,845 _02755 IAI47_02760: IAI47_02760 - ribosome-associated protein, at 572,976 to 573,521 _02760 IAI47_02765: IAI47_02765 - metalloprotease PmbA, at 573,624 to 574,976 _02765 IAI47_02770: IAI47_02770 - cytochrome b562, at 575,039 to 575,425 _02770 IAI47_02775: IAI47_02775 - glycine dehydrogenase, at 575,720 to 576,055 _02775
Group Condition IAI47_02755 IAI47_02760 IAI47_02765 IAI47_02770 IAI47_02775
nitrogen source TNT (N) +0.0 N.D. -2.1 -0.2 -0.4
nitrogen source TNT (N) -0.0 N.D. -1.6 -0.3 -0.3
carbon source Ying_sugar7 rep B; time point 3 -0.0 N.D. -1.8 -0.1 -0.3
carbon source Ying_sugar7 rep C; time point 3 -0.2 N.D. -1.8 -0.1 -0.1
carbon source Ying_sugar7 rep B; time point 2 -0.1 N.D. -1.0 -0.3 -0.8
nitrogen source Ammonium chloride (N) -0.0 N.D. -1.1 -0.0 -1.0
nitrogen source TNT (N) -0.1 N.D. -1.4 -0.2 -0.4
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 N.D. -0.2 -0.9 -0.6
carbon source Ying_sugar7 rep A; time point 3 -0.1 N.D. -1.3 -0.4 -0.2
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 N.D. +0.3 -0.3 -1.1
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 N.D. -0.3 -1.1 +0.3
carbon source Ying_sugar7 rep C; time point 2 +0.0 N.D. -1.0 +0.5 -0.6
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 N.D. -0.5 -0.9 +0.1
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 N.D. -0.4 -0.6 +0.6
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 N.D. -0.0 -1.1 +0.8
stress copper (II) chloride 2 uM, anaerobic -0.1 N.D. -0.6 +0.8 -0.7
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 N.D. +0.1 -0.6 +0.6
stress copper (II) chloride 2 uM, anaerobic +0.5 N.D. -0.6 +0.3 -0.6
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 N.D. -1.0 -0.1 +1.3
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic -0.6 N.D. +0.5 -0.4 +0.4
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 N.D. -0.8 -0.2 +1.0
stress Uranyl Acetate Dihydrate 200 uM, aerobic -0.5 N.D. +0.7 -0.4 +0.4
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic -0.4 N.D. +0.7 -0.3 +0.4
stress Aluminum potassium sulfate dodecahydrate 1 mM, aerobic -0.4 N.D. +0.8 -0.3 +0.3
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 N.D. -0.4 +0.0 +1.3
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 N.D. -0.4 +0.2 +1.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 N.D. +0.3 -0.4 +1.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 N.D. -0.4 +0.4 +1.3
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.3 N.D. +0.5 +0.8 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 +0.3 N.D. +0.2 +1.0 +0.3
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IAI47_02755
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IAI47_02760
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IAI47_02775
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