Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_02625 and IAI47_02630 are separated by 68 nucleotidesIAI47_02630 and IAI47_02635 are separated by 220 nucleotidesIAI47_02635 and IAI47_02640 overlap by 27 nucleotidesIAI47_02640 and IAI47_02645 are separated by 56 nucleotides IAI47_02625: IAI47_02625 - ribonuclease R, at 542,865 to 545,354 _02625 IAI47_02630: IAI47_02630 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 545,423 to 546,157 _02630 IAI47_02635: IAI47_02635 - isovaleryl-CoA dehydrogenase, at 546,378 to 548,006 _02635 IAI47_02640: IAI47_02640 - biofilm peroxide resistance protein BsmA, at 547,980 to 548,306 _02640 IAI47_02645: IAI47_02645 - Cache 3/Cache 2 fusion domain-containing protein, at 548,363 to 550,294 _02645
Group Condition IAI47_02625 IAI47_02630 IAI47_02635 IAI47_02640 IAI47_02645
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 -0.3 -0.4 -0.2 -0.1
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 -0.4 -0.2 -0.1 -0.0
carbon source Ying_Nucleobase14 rep B; time point 3 -1.3 -0.2 -0.0 +0.0 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 -0.4 -0.2 +0.4 +0.1
carbon source Ying_Nucleobase14 rep A; time point 3 -1.3 -0.2 +0.2 +0.2 +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 -1.3 -0.2 +0.2 +0.2 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 -0.4 +0.1 -0.1 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 -0.6 +0.1 +0.1 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 -0.4 +0.0 +0.3 +0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.1 -0.2 +0.2 +0.4 +0.1
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.8 -0.4 +0.1 +0.3 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 -0.5 -0.1 +0.3 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 -0.4 -0.1 +0.4 +0.4
carbon source Ying_Nucleobase14 rep B; time point 2 -1.0 +0.0 +0.1 +0.4 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 -0.5 +0.3 +0.2 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 -0.3 +0.0 +0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 -0.6 +0.2 +0.4 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=36hrs; Outgrowth=LBkan50 -0.8 -0.4 +0.1 +0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 -0.3 +0.0 +0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 -0.6 +0.2 +0.5 +0.3
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -0.6 +0.2 +0.4 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.6 +0.2 +0.3 +0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 -0.3 +0.4 +0.3 +0.3
stress copper (II) chloride 2 uM, anaerobic +0.2 +0.6 +0.1 -0.5 -0.3
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 +0.2 +0.4 -0.2 +0.2
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 +0.1 +0.2 +0.3 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -1.0 +0.3 +0.5 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 -0.6 +0.0 +0.5 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.4 -0.6 +0.2 +0.2 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -0.3 +0.3 +0.5 +0.4
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IAI47_02625
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IAI47_02630
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IAI47_02640
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IAI47_02645
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