Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_02580 and IAI47_02585 overlap by 8 nucleotidesIAI47_02585 and IAI47_02590 are separated by 103 nucleotidesIAI47_02590 and IAI47_02595 are separated by 71 nucleotidesIAI47_02595 and IAI47_02600 are separated by 224 nucleotides IAI47_02580: IAI47_02580 - DNA mismatch repair endonuclease MutL, at 533,417 to 535,282 _02580 IAI47_02585: IAI47_02585 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 535,275 to 536,225 _02585 IAI47_02590: IAI47_02590 - RNA chaperone Hfq, at 536,329 to 536,643 _02590 IAI47_02595: IAI47_02595 - GTPase HflX, at 536,715 to 537,995 _02595 IAI47_02600: IAI47_02600 - FtsH protease activity modulator HflK, at 538,220 to 539,458 _02600
Group Condition IAI47_02580 IAI47_02585 IAI47_02590 IAI47_02595 IAI47_02600
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -3.0 -0.4 -0.4 -1.0
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 -1.9 -0.9 -0.1 -0.3
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -2.1 -0.3 -0.2 -0.8
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -2.3 -0.3 -0.3 -0.6
stress copper (II) chloride 5 uM, aerobic -0.0 -1.7 -0.7 -0.4 -0.5
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -2.1 -0.4 -0.2 -0.7
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.0 -2.9 +0.3 -0.1 -0.4
stress Nickel (II) chloride 40 uM, aerobic -0.1 -1.5 -0.3 -0.3 -0.8
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.3 -0.3 -2.5 +0.2 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 -1.5 -1.2 +0.2 -0.3
stress Nickel (II) chloride 40 uM, aerobic +0.1 -1.8 -0.2 -0.3 -0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 -0.1 -2.1 +0.7 -0.4 -0.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.2 -2.1 +0.6 -0.3 -0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -1.9 +0.8 -0.0 -1.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 +0.0 -1.8 +0.6 -0.2 -0.6
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 -2.7 +0.6 -0.2 +0.3
nitrogen source Ammonium chloride (N) -0.5 -1.7 +0.3 -0.1 +0.3
carbon source Ying_all64 rep A; time point 1 +0.1 -0.4 -2.1 +0.4 +0.8
carbon source Ying_all64 rep C; time point 1 +0.1 -0.7 -1.8 +0.4 +0.8
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -1.4 +1.2 +0.2 -1.2
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 -1.6 +0.8 -0.2 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 -1.5 +1.5 +0.1 -0.9
carbon source Ying_all64 rep C; time point 2 -0.0 -0.2 -1.7 +0.5 +0.8
carbon source Ying_all64 rep B; time point 1 +0.1 -0.4 -1.4 +0.3 +0.8
carbon source Ying_all64 rep A; time point 2 +0.1 +0.2 -2.0 +0.4 +0.9
carbon source Ying_all64 rep B; time point 2 +0.1 -0.0 -1.5 +0.5 +0.9
stress dichromate 5 uM, aerobic -0.0 -1.4 +0.8 +0.3 +0.5
carbon source Ying_all64 rep B; time point 3 +0.1 +0.5 -1.8 +0.5 +0.9
nitrogen source nitrogen source nitrite 1mM +0.2 +1.3 -1.5 +0.1 +0.2
carbon source Ying_all64 rep A; time point 3 -0.1 +0.4 -1.4 +0.5 +0.9
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