Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_02345 and IAI47_02350 are separated by 14 nucleotidesIAI47_02350 and IAI47_02355 are separated by 34 nucleotidesIAI47_02355 and IAI47_02360 are separated by 221 nucleotidesIAI47_02360 and IAI47_02365 are separated by 8 nucleotides IAI47_02345: IAI47_02345 - 5S ribosomal RNA, at 485,552 to 485,667 _02345 IAI47_02350: IAI47_02350 - tRNA-Thr, at 485,682 to 485,757 _02350 IAI47_02355: IAI47_02355 - 5S ribosomal RNA, at 485,792 to 485,907 _02355 IAI47_02360: IAI47_02360 - amino acid ABC transporter ATP-binding protein, at 486,129 to 486,890 _02360 IAI47_02365: IAI47_02365 - amino acid ABC transporter permease, at 486,899 to 487,999 _02365
Group Condition IAI47_02345 IAI47_02350 IAI47_02355 IAI47_02360 IAI47_02365
carbon source Ying_sugar7 rep C; time point 2 -1.6 -4.3 N.D. +0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -3.5 -2.0 N.D. -0.1 +0.0
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 -4.7 N.D. +0.2 -0.0
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.9 -3.6 N.D. +0.3 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -3.9 -1.4 N.D. +0.2 +0.3
stress copper (II) chloride 2 uM, anaerobic -0.4 -4.4 N.D. +0.1 +0.0
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -2.6 -1.6 N.D. -0.2 -0.0
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -2.6 -1.5 N.D. -0.2 -0.2
no stress control Defined media control, aerobic +0.4 -5.0 N.D. +0.1 +0.1
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -2.6 -1.9 N.D. +0.2 -0.0
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.4 -4.7 N.D. +0.0 +0.1
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -3.9 +0.2 N.D. -0.4 -0.1
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -1.3 -2.5 N.D. +0.0 -0.1
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.7 -3.2 N.D. +0.3 -0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.1 -2.5 N.D. +0.2 +0.0
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.4 -3.3 N.D. -0.2 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -2.8 -0.7 N.D. +0.3 -0.1
carbon source Ying_Others16 rep C; time point 1 -0.1 -3.3 N.D. +0.1 +0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.8 -4.6 N.D. -0.2 +0.3
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.8 -2.5 N.D. -0.3 -0.1
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -2.7 +1.0 N.D. +0.1 -0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -1.9 +2.5 N.D. -0.4 -0.3
carbon source Ying_OrganicAcid7 rep A; time point 3 -1.0 -0.9 N.D. +0.9 +1.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +1.0 +1.7 N.D. -0.9 -0.6
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +2.3 +0.8 N.D. -0.7 -0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.6 +3.0 N.D. -0.8 -0.4
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +2.3 +1.5 N.D. -0.5 -0.7
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 +0.1 +3.2 N.D. -0.2 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +2.0 +2.5 N.D. -0.7 -0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +2.9 +3.0 N.D. -0.9 -0.7
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IAI47_02345
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IAI47_02350
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IAI47_02365
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