Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_02315 and IAI47_02320 overlap by 4 nucleotidesIAI47_02320 and IAI47_02325 overlap by 34 nucleotidesIAI47_02325 and IAI47_02330 are separated by 491 nucleotidesIAI47_02330 and IAI47_02335 are separated by 82 nucleotides IAI47_02315: IAI47_02315 - shikimate dehydrogenase, at 478,425 to 479,243 _02315 IAI47_02320: IAI47_02320 - DUF1488 domain-containing protein, at 479,240 to 479,497 _02320 IAI47_02325: IAI47_02325 - gamma carbonic anhydrase family protein, at 479,464 to 480,018 _02325 IAI47_02330: IAI47_02330 - 16S ribosomal RNA, at 480,510 to 482,056 _02330 IAI47_02335: IAI47_02335 - tRNA-Glu, at 482,139 to 482,213 _02335
Group Condition IAI47_02315 IAI47_02320 IAI47_02325 IAI47_02330 IAI47_02335
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -1.2 +0.0 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.8 -0.3 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.6 -0.4 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.5 -0.4 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.7 -0.2 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.3 -0.5 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.7 -0.2 N.D. N.D.
stress copper (II) chloride 2 uM, anaerobic N.D. -0.8 -0.0 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.5 -0.2 N.D. N.D.
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.6 -0.1 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.8 +0.2 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.4 -0.2 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.6 +0.0 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.5 -0.2 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.3 -0.3 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.5 +0.1 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.6 +0.2 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.6 +0.2 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.6 +0.2 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.6 +0.3 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.5 +0.2 N.D. N.D.
survival Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. -0.5 +0.2 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.5 +0.2 N.D. N.D.
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=48hrs; Outgrowth=LBkan50 N.D. +0.2 -0.4 N.D. N.D.
nitrogen source nitrogen source nitrate 20mM N.D. -0.4 +0.3 N.D. N.D.
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. -0.4 +0.2 N.D. N.D.
carbon source Ying_Others16 rep B; time point 2 N.D. +0.4 -0.3 N.D. N.D.
carbon source Ying_sugar7 rep A; time point 2 N.D. +0.5 +0.1 N.D. N.D.
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic N.D. +0.5 +0.3 N.D. N.D.
carbon source Ying_sugar7 rep C; time point 2 N.D. +0.5 +0.3 N.D. N.D.
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