Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_02305 and IAI47_02310 are separated by 3 nucleotidesIAI47_02310 and IAI47_02315 are separated by 3 nucleotidesIAI47_02315 and IAI47_02320 overlap by 4 nucleotidesIAI47_02320 and IAI47_02325 overlap by 34 nucleotides IAI47_02305: IAI47_02305 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 477,297 to 477,845 _02305 IAI47_02310: IAI47_02310 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 477,849 to 478,421 _02310 IAI47_02315: IAI47_02315 - shikimate dehydrogenase, at 478,425 to 479,243 _02315 IAI47_02320: IAI47_02320 - DUF1488 domain-containing protein, at 479,240 to 479,497 _02320 IAI47_02325: IAI47_02325 - gamma carbonic anhydrase family protein, at 479,464 to 480,018 _02325
Group Condition IAI47_02305 IAI47_02310 IAI47_02315 IAI47_02320 IAI47_02325
survival Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 N.D. N.D. -1.2 +0.0
stress Uranyl Acetate Dihydrate 200 uM, aerobic -1.5 N.D. N.D. -0.5 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.7 N.D. N.D. -0.8 -0.3
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.0 N.D. N.D. -0.5 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.8 N.D. N.D. -0.6 -0.4
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.2 N.D. N.D. -0.2 -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.5 N.D. N.D. -0.7 -0.2
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.7 N.D. N.D. -0.5 +0.1
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -1.3 N.D. N.D. -0.2 +0.3
stress copper (II) chloride 2 uM, anaerobic -0.4 N.D. N.D. -0.8 -0.0
stress Cobalt chloride 10 uM, anaerobic -0.8 N.D. N.D. -0.4 +0.0
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 N.D. N.D. -0.8 +0.2
nitrogen source nitrogen source Ammonium chloride 20mM -0.8 N.D. N.D. -0.3 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 N.D. N.D. -0.3 +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 -0.8 N.D. N.D. +0.1 -0.2
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.5 N.D. N.D. -0.5 +0.2
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.6 N.D. N.D. -0.4 +0.2
nitrogen source nitrogen source nitrate 20mM -0.5 N.D. N.D. -0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.3 N.D. N.D. -0.5 -0.4
carbon source Ying_sugar7 rep B; time point 2 -0.9 N.D. N.D. +0.4 +0.0
nitrogen source nitrogen source nitrite 1mM -0.9 N.D. N.D. +0.0 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.9 N.D. N.D. +0.2 +0.2
carbon source Ying_sugar7 rep C; time point 2 -1.2 N.D. N.D. +0.5 +0.3
carbon source Ying_sugar7 rep A; time point 2 -0.9 N.D. N.D. +0.5 +0.1
nitrogen source Ammonium chloride (N) -0.8 N.D. N.D. +0.3 +0.2
no stress control Defined media control, aerobic -0.7 N.D. N.D. +0.3 +0.3
survival Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.7 N.D. N.D. +0.3 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.8 N.D. N.D. -0.7 -0.2
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.6 N.D. N.D. -0.3 -0.2
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +1.0 N.D. N.D. -0.5 -0.2
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IAI47_02305
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IAI47_02310
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IAI47_02320
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IAI47_02325
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