Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_01910 and IAI47_01915 overlap by 17 nucleotidesIAI47_01915 and IAI47_01920 are separated by 16 nucleotidesIAI47_01920 and IAI47_01925 are separated by 404 nucleotidesIAI47_01925 and IAI47_01930 are separated by 35 nucleotides IAI47_01910: IAI47_01910 - ribulose-phosphate 3-epimerase, at 418,493 to 419,176 _01910 IAI47_01915: IAI47_01915 - phosphoglycolate phosphatase, at 419,160 to 419,837 _01915 IAI47_01920: IAI47_01920 - tryptophan--tRNA ligase, at 419,854 to 420,855 _01920 IAI47_01925: IAI47_01925 - cytosine deaminase, at 421,260 to 422,537 _01925 IAI47_01930: IAI47_01930 - MFS transporter TsgA, at 422,573 to 423,751 _01930
Group Condition IAI47_01910 IAI47_01915 IAI47_01920 IAI47_01925 IAI47_01930
carbon source Ying_Nucleobase14 rep C; time point 3 N.D. -1.0 N.D. -0.1 -2.5
carbon source Ying_Nucleobase14 rep B; time point 3 N.D. -0.6 N.D. -0.2 -2.7
carbon source Ying_Nucleobase14 rep A; time point 3 N.D. -0.4 N.D. -0.1 -2.6
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. -0.4 N.D. -0.1 -2.0
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. -0.6 N.D. +0.0 -1.8
carbon source Ying_Nucleobase14 rep A; time point 2 N.D. -0.5 N.D. -0.1 -1.7
carbon source Ying_Others16 rep C; time point 3 N.D. -2.0 N.D. -0.1 -0.0
carbon source Ying_Others16 rep B; time point 3 N.D. -1.9 N.D. +0.0 -0.0
carbon source Ying_Others16 rep A; time point 3 N.D. -1.7 N.D. -0.0 -0.0
carbon source Ying_AminoAcid20 rep A; time point 3 N.D. -1.4 N.D. -0.1 +0.0
carbon source Ying_Nucleobase14 rep A; time point 1 N.D. -0.0 N.D. -0.0 -1.3
stress copper (II) chloride 2 uM, anaerobic N.D. -0.9 N.D. -0.4 +0.0
carbon source Ying_Others16 rep B; time point 2 N.D. -1.2 N.D. -0.0 -0.0
carbon source Ying_Others16 rep C; time point 2 N.D. -1.0 N.D. -0.1 -0.2
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. -1.3 N.D. -0.0 +0.1
carbon source Ying_AminoAcid20 rep B; time point 3 N.D. -1.2 N.D. +0.0 +0.0
carbon source Ying_Nucleobase14 rep B; time point 1 N.D. +0.1 N.D. -0.0 -1.2
carbon source Ying_Nucleobase14 rep C; time point 1 N.D. +0.1 N.D. +0.0 -1.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.6 N.D. -0.3 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.8 N.D. -0.2 +0.4
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +1.0 N.D. -0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +1.0 N.D. -0.1 +0.2
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.6 N.D. +0.2 +0.3
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +0.7 N.D. -0.1 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +0.9 N.D. -0.1 +0.4
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +1.0 N.D. +0.1 +0.1
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 N.D. +0.7 N.D. +0.0 +0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +1.2 N.D. -0.1 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +1.0 N.D. +0.0 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 N.D. +1.1 N.D. -0.1 +0.3
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IAI47_01910
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IAI47_01915
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IAI47_01925
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IAI47_01930
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