Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_01765 and IAI47_01770 are separated by 160 nucleotidesIAI47_01770 and IAI47_01775 are separated by 9 nucleotidesIAI47_01775 and IAI47_01780 are separated by 35 nucleotidesIAI47_01780 and IAI47_01785 are separated by 58 nucleotides IAI47_01765: IAI47_01765 - DeoR/GlpR family transcriptional regulator, at 385,280 to 386,038 _01765 IAI47_01770: IAI47_01770 - maltodextrin phosphorylase, at 386,199 to 388,604 _01770 IAI47_01775: IAI47_01775 - 4-alpha-glucanotransferase, at 388,614 to 390,695 _01775 IAI47_01780: IAI47_01780 - Fe-S biogenesis protein NfuA, at 390,731 to 391,306 _01780 IAI47_01785: IAI47_01785 - DNA utilization protein GntX, at 391,365 to 392,045 _01785
Group Condition IAI47_01765 IAI47_01770 IAI47_01775 IAI47_01780 IAI47_01785
carbon source Ying_Others16 rep A; time point 3 -1.9 +0.0 +0.1 -2.5 +0.0
no stress control Defined media control, aerobic -0.4 -0.0 -0.1 -3.5 -0.3
carbon source Ying_Others16 rep B; time point 3 -1.9 +0.0 -0.2 -2.4 +0.2
carbon source Ying_Others16 rep C; time point 3 -2.0 +0.1 -0.2 -2.2 +0.2
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic -0.2 -0.1 -0.0 -3.7 +0.0
carbon source Ying_Others16 rep A; time point 2 -1.7 +0.1 -0.1 -2.2 -0.0
carbon source Ying_AminoAcid20 rep A; time point 3 -1.9 +0.1 -0.1 -1.9 +0.0
carbon source Ying_AminoAcid20 rep B; time point 3 -2.0 +0.0 -0.2 -1.8 +0.1
carbon source Ying_AminoAcid20 rep C; time point 3 -2.1 +0.1 -0.2 -1.4 +0.2
carbon source Ying_AminoAcid20 rep C; time point 2 -1.8 +0.0 +0.1 -1.7 +0.0
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.5 -0.3 -0.1 -1.9 -0.5
carbon source Ying_Others16 rep B; time point 2 -1.4 +0.0 +0.0 -2.0 +0.1
carbon source Ying_AminoAcid20 rep A; time point 2 -1.9 +0.0 +0.2 -1.6 -0.0
carbon source Ying_AminoAcid20 rep B; time point 2 -1.8 +0.1 -0.0 -1.8 +0.3
carbon source Ying_Nucleobase14 rep A; time point 3 -1.8 -0.0 -0.0 -1.3 +0.1
carbon source Ying_Nucleobase14 rep C; time point 2 -1.6 +0.0 +0.0 -1.4 -0.0
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.4 -0.2 -0.0 -2.0 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.3 -0.0 -0.2 -2.8 +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 -1.8 +0.0 -0.2 -0.8 +0.1
carbon source Ying_Nucleobase14 rep B; time point 3 -1.9 -0.0 -0.0 -0.7 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 -0.3 +0.1 +0.2 -2.4 -0.1
carbon source Ying_Others16 rep C; time point 2 -1.4 +0.0 +0.0 -1.1 -0.0
survival Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.8 +0.2 +0.1 -1.5 -0.3
carbon source Ying_OrganicAcid7 rep B; time point 2 +0.0 +0.0 +0.2 -2.5 -0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.7 +0.1 -0.0 -1.6 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 -0.0 +0.1 +0.2 -2.3 +0.0
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 -0.1 +0.3 -2.1 +0.0
carbon source Ying_AminoAcid20 rep C; time point 1 -1.2 +0.1 +0.2 -1.0 +0.2
survival Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.6 +0.1 +0.2 +1.9 -0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.9 -0.0 +0.0 +1.5 -0.1
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IAI47_01770
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