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Protein
Homologs
Fitness for 5 genes in
Pantoea sp. MT58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
IAI47_01570 and IAI47_01575 overlap by 4 nucleotides
IAI47_01575 and IAI47_01580 overlap by 4 nucleotides
IAI47_01580 and IAI47_01585 are separated by 1 nucleotides
IAI47_01585 and IAI47_01590 are separated by 618 nucleotides
IAI47_01570: IAI47_01570 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 341,159 to 342,085
_01570
IAI47_01575: IAI47_01575 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 342,082 to 343,353
_01575
IAI47_01580: IAI47_01580 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 343,350 to 344,117
_01580
IAI47_01585: IAI47_01585 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 344,119 to 344,832
_01585
IAI47_01590: IAI47_01590 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 345,451 to 346,767
_01590
Group
Condition
IAI47
_01570
IAI47
_01575
IAI47
_01580
IAI47
_01585
IAI47
_01590
carbon source
Ying_all64 rep C; time point 3
-0.3
-0.2
-0.2
-0.4
-0.0
nitrogen source
nitrogen source nitrite 1mM
-0.1
-0.3
-0.3
-0.2
-0.2
stress
Manganese (II) chloride tetrahydrate 50 uM, aerobic
-0.3
+0.1
-0.2
-0.3
-0.0
nitrogen source
nitrogen source nitrite 0.5mM
-0.2
-0.4
+0.1
-0.1
+0.0
survival
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
-0.2
-0.6
+0.1
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50
-0.1
-0.2
-0.4
+0.1
+0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.3
-0.2
-0.3
-0.1
-0.0
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.3
-0.1
-0.1
+0.3
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.0
-0.4
+0.3
-0.2
survival
Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
-0.2
-0.1
-0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.0
-0.3
+0.2
-0.2
stress
copper (II) chloride 2 uM, anaerobic
+0.2
-0.4
-0.1
+0.1
+0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.1
+0.2
-0.3
-0.1
survival
Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
-0.1
-0.2
+0.3
+0.2
-0.2
survival
Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.1
-0.3
+0.2
-0.1
survival
Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.3
+0.2
+0.3
-0.1
survival
Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
+0.1
+0.2
-0.3
+0.1
nitrogen source
Ammonium chloride (N)
+0.2
-0.0
+0.2
+0.3
-0.2
survival
Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.2
-0.1
-0.2
+0.2
+0.2
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
+0.0
-0.3
+0.1
+0.2
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.1
+0.2
+0.3
+0.1
-0.2
survival
Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.5
+0.0
-0.4
+0.2
+0.2
survival
Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.0
-0.1
+0.1
+0.5
+0.1
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.3
+0.5
-0.5
+0.2
survival
Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
-0.1
+0.2
+0.4
-0.1
survival
Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.4
+0.2
-0.1
+0.1
+0.1
survival
Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
+0.5
-0.1
-0.0
+0.3
+0.1
survival
Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
+0.2
+0.0
+0.1
+0.4
+0.1
survival
Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.3
-0.1
+0.2
+0.2
+0.3
survival
Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
+0.0
+0.4
+0.1
+0.3
+0.2
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