Fitness for 5 genes in Pantoea sp. MT58

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500 ntIAI47_01565 and IAI47_01570 are separated by 71 nucleotidesIAI47_01570 and IAI47_01575 overlap by 4 nucleotidesIAI47_01575 and IAI47_01580 overlap by 4 nucleotidesIAI47_01580 and IAI47_01585 are separated by 1 nucleotides IAI47_01565: IAI47_01565 - branched-chain amino acid ABC transporter substrate-binding protein, at 339,960 to 341,087 _01565 IAI47_01570: IAI47_01570 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 341,159 to 342,085 _01570 IAI47_01575: IAI47_01575 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 342,082 to 343,353 _01575 IAI47_01580: IAI47_01580 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG, at 343,350 to 344,117 _01580 IAI47_01585: IAI47_01585 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF, at 344,119 to 344,832 _01585
Group Condition IAI47_01565 IAI47_01570 IAI47_01575 IAI47_01580 IAI47_01585
carbon source Ying_all64 rep C; time point 3 -0.3 -0.3 -0.2 -0.2 -0.4
carbon source Ying_all64 rep A; time point 3 -0.2 -0.2 -0.2 -0.2 -0.2
nitrogen source nitrogen source nitrite 1mM -0.0 -0.1 -0.3 -0.3 -0.2
carbon source Ying_all64 rep B; time point 2 -0.3 -0.1 -0.2 -0.2 -0.2
stress Manganese (II) chloride tetrahydrate 50 uM, aerobic -0.1 -0.3 +0.1 -0.2 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=1hrs; Outgrowth=LBkan50 -0.2 -0.1 -0.2 -0.4 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.1 -0.2 -0.6 +0.1
nitrogen source nitrogen source nitrite 0.5mM +0.0 -0.2 -0.4 +0.1 -0.1
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 -0.1 -0.4 +0.1 +0.2
no stress control Defined media control, aerobic -0.3 +0.1 +0.0 -0.4 +0.2
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 -0.1 -0.3 +0.2 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.3 -0.2 -0.3 -0.1
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.0 -0.0 -0.4 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 -0.3 -0.1 -0.1 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=4hrs; Outgrowth=LBkan50 -0.2 -0.0 +0.1 -0.3 +0.3
survival Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.2 -0.3 +0.2 -0.2 +0.0
survival Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.3 +0.1 -0.2 -0.0 +0.4
survival Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.2 +0.0 -0.3 +0.2 +0.3
stress copper (II) chloride 2 uM, anaerobic +0.4 +0.2 -0.4 -0.1 +0.1
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 +0.2 +0.1 +0.2 -0.3
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.2 +0.5 +0.0 -0.3 +0.1
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 +0.1 +0.2 +0.1 +0.2 -0.3
survival Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.1 +0.0 -0.1 +0.1 +0.5
survival Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.0 +0.5 +0.0 -0.4 +0.2
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 -0.0 +0.2 +0.3 +0.5 -0.5
survival Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 -0.1 +0.5 -0.1 -0.0 +0.3
survival Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.3 -0.1 +0.2 +0.2
survival Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.2 +0.4 +0.2 -0.1 -0.0
survival Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 -0.1 +0.4 -0.1 +0.2 +0.4
survival Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 +0.1 +0.4 +0.2 -0.1 +0.1
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IAI47_01570
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IAI47_01585
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