Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS23880	HSERO_RS23885	HSERO_RS23890	HSERO_RS23895	HSERO_RS23900
plant	Control soil assay; outgrowth in LB	+0.1	+0.2	N.D.	-1.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.2	N.D.	-0.3	-0.6
nutrient	L-Histidine	-0.6	-0.2	N.D.	+0.3	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.0	+0.3	N.D.	-0.8	-0.3
control	NoPredeControl	-1.3	+0.3	N.D.	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.1	N.D.	+0.7	-0.4
carbon source	L-Proline (C)	-0.4	+1.0	N.D.	-0.6	+0.4
carbon source	pyruvate (C)	+0.3	+0.3	N.D.	-0.5	+0.4
stress	sodium fluoride 100 mM	-0.5	+0.3	N.D.	+0.2	+0.5
carbon source	D-Mannose (C)	+0.7	+0.2	N.D.	-1.0	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.3	N.D.	+0.4	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.5	N.D.	+0.7	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.2	N.D.	-0.5	+0.7
carbon source	Xylitol (C)	+0.6	+0.3	N.D.	-0.4	+0.4
carbon source	D-Galactose (C)	+0.4	+0.6	N.D.	-0.3	+0.2
carbon source	D,L-Lactate (C)	+0.1	+1.5	N.D.	-0.2	-0.3
carbon source	D-Glucose (C)	+0.7	+0.8	N.D.	-0.2	+0.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.0	+0.8	N.D.	+0.3	+0.3
carbon source	D-Glucose (C)	+0.4	+0.1	N.D.	+0.7	+0.2
carbon source	D-Glucose (C)	+0.7	+0.5	N.D.	+0.3	+0.0
carbon source	D-Lactate (C)	+0.6	+0.6	N.D.	+0.1	+0.3
carbon source	D-Sorbitol (C)	+0.5	+0.3	N.D.	+0.2	+0.6
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	+1.4	N.D.	+0.3	+0.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.0	+1.6	N.D.	-0.1	+0.1
carbon source	D-Lactate (C)	+0.4	+0.8	N.D.	+0.1	+0.5
carbon source	L-Proline (C)	+0.3	+0.8	N.D.	+0.8	-0.0
carbon source	D,L-Lactate (C)	+0.3	+1.2	N.D.	+0.3	+0.2
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.2	+2.4	N.D.	+0.0	+0.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	+2.3	N.D.	+0.6	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.0	+2.4	N.D.	+0.4	+0.5