Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS23875 and HSERO_RS23880 are separated by 35 nucleotidesHSERO_RS23880 and HSERO_RS23885 are separated by 217 nucleotidesHSERO_RS23885 and HSERO_RS23890 are separated by 88 nucleotidesHSERO_RS23890 and HSERO_RS23895 are separated by 271 nucleotides HSERO_RS23875: HSERO_RS23875 - lipoate-protein ligase B, at 5,473,531 to 5,474,223 _RS23875 HSERO_RS23880: HSERO_RS23880 - hypothetical protein, at 5,474,259 to 5,474,615 _RS23880 HSERO_RS23885: HSERO_RS23885 - XRE family transcriptional regulator, at 5,474,833 to 5,475,753 _RS23885 HSERO_RS23890: HSERO_RS23890 - hypothetical protein, at 5,475,842 to 5,476,123 _RS23890 HSERO_RS23895: HSERO_RS23895 - amidophosphoribosyltransferase, at 5,476,395 to 5,476,973 _RS23895
Group Condition HSERO_RS23875 HSERO_RS23880 HSERO_RS23885 HSERO_RS23890 HSERO_RS23895
plant Control soil assay; outgrowth in LB N.D. +0.1 +0.2 N.D. -1.3
control NoPredeControl N.D. -1.3 +0.3 N.D. +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.0 +0.3 N.D. -0.8
nitrogen source L-Proline (N) N.D. -0.3 +0.5 N.D. -0.3
carbon source D-Mannose (C) N.D. +0.7 +0.2 N.D. -1.0
carbon source L-Proline (C) N.D. -0.4 +1.0 N.D. -0.6
carbon source pyruvate (C) N.D. +0.2 +0.4 N.D. -0.5
carbon source pyruvate (C) N.D. +0.3 +0.3 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 -0.2 N.D. +0.8
carbon source Xylitol (C) N.D. +0.6 +0.3 N.D. -0.4
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. -0.3 +0.8 N.D. +0.0
carbon source D-Galactose (C) N.D. +0.4 +0.6 N.D. -0.3
carbon source L-Rhamnose (C) N.D. +0.4 -0.2 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 +0.5 N.D. +0.7
carbon source a-Ketoglutaric (C) N.D. +0.3 +0.5 N.D. +0.4
plant Control soil assay; outgrowth in LB N.D. +0.0 +0.4 N.D. +0.7
carbon source D-Glucose (C) N.D. +0.4 +0.1 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.2 +0.4 N.D. +0.6
carbon source D-Lactate (C) N.D. +0.6 +0.6 N.D. +0.1
carbon source D-Glucose (C) N.D. +0.7 +0.8 N.D. -0.2
carbon source D-Lactate (C) N.D. +0.4 +0.8 N.D. +0.1
carbon source D,L-Lactate (C) N.D. +0.1 +1.5 N.D. -0.2
carbon source D-Glucose (C) N.D. +0.7 +0.5 N.D. +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.1 +1.4 N.D. +0.3
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. +0.0 +1.6 N.D. -0.1
carbon source D,L-Lactate (C) N.D. +0.3 +1.2 N.D. +0.3
carbon source L-Proline (C) N.D. +0.3 +0.8 N.D. +0.8
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. +0.2 +2.4 N.D. +0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.0 +2.4 N.D. +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.1 +2.3 N.D. +0.6
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