Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS23705 and HSERO_RS23710 are separated by 243 nucleotidesHSERO_RS23710 and HSERO_RS23715 are separated by 52 nucleotidesHSERO_RS23715 and HSERO_RS23720 overlap by 11 nucleotidesHSERO_RS23720 and HSERO_RS23725 are separated by 160 nucleotides HSERO_RS23705: HSERO_RS23705 - hydrogenase, at 5,434,091 to 5,434,429 _RS23705 HSERO_RS23710: HSERO_RS23710 - response regulator GlrR, at 5,434,673 to 5,436,055 _RS23710 HSERO_RS23715: HSERO_RS23715 - hypothetical protein, at 5,436,108 to 5,436,608 _RS23715 HSERO_RS23720: HSERO_RS23720 - histidine kinase, at 5,436,598 to 5,438,076 _RS23720 HSERO_RS23725: HSERO_RS23725 - peptidase M20, at 5,438,237 to 5,439,481 _RS23725
Group Condition HSERO_RS23705 HSERO_RS23710 HSERO_RS23715 HSERO_RS23720 HSERO_RS23725
carbon source D,L-Lactate (C) -0.2 -0.0 -1.1 -1.2 -0.6
carbon source D-Lactate (C) -0.2 -0.4 -1.1 -1.0 -0.0
carbon source L-Proline (C) -0.3 -0.1 -0.9 -1.0 -0.1
carbon source D-Lactate (C) -0.5 -0.1 -0.9 -0.8 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.4 -0.4 -0.4 -0.5 -0.5
carbon source L-Lactate (C) -0.4 -0.4 -0.6 -0.6 -0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.4 -0.2 -0.6 -0.3 -0.5
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.1 -0.4 -0.7 -0.3 -0.5
carbon source D-Sorbitol (C) -0.2 -0.3 -0.4 -0.7 -0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.6 -0.1 -0.4 -0.2 -0.6
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.4 -0.5 -0.4 -0.3 -0.4
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.2 -0.3 -0.8 -0.6 -0.1
carbon source L-Rhamnose (C) -0.5 -0.2 -0.4 -0.7 -0.0
stress Lomefloxacin 0.012 mM -0.5 +0.3 -1.0 -1.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.1 -0.6 -0.3 -0.6
carbon source L-Proline (C) -0.1 +0.2 -0.7 -0.9 -0.3
carbon source L-Rhamnose (C) -0.4 -0.4 -0.6 -0.5 +0.1
carbon source D-Galactose (C) -0.6 -0.3 -0.7 -0.4 +0.2
carbon source D,L-Lactate (C) -0.2 +0.0 -0.6 -1.0 +0.3
stress Sisomicin 0.125 mg/ml -0.1 +0.0 -1.1 -0.7 +0.6
carbon source D-Glucose (C) -0.3 -0.4 -0.5 -0.4 +0.4
carbon source D-Gluconic Acid (C) -0.2 +0.1 -0.7 -0.5 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.1 -0.1 +0.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.4 +0.8 +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.5 +0.8 +0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 -0.1 -0.3 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 -0.5 +0.7 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.3 +0.4 +0.4 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -0.2 +0.3 +0.5 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 +0.5 +0.6 +0.3 +0.2
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