Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS23610	HSERO_RS23615	HSERO_RS23620	HSERO_RS23625	HSERO_RS23630
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.2	-0.3	-0.7	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.0	-0.5	-0.6	+0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.1	-0.9	-0.5	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.7	-0.2	+0.0	-0.3	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	-0.1	-0.2	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.2	+0.3	-0.3	-1.0
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-1.0	-0.2	+0.0	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	+0.0	-0.2	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.3	-0.5	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	+0.2	+0.3	-0.7	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.7	+0.2	-0.4	+0.3	-0.5
carbon source	L-Rhamnose (C)	+0.1	-0.6	-0.6	+0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.1	+0.3	-0.2	-1.0
nitrogen source	L-Proline (N)	+0.1	-0.5	+0.3	-0.6	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-1.0	+0.4	+0.2	-0.2	-0.4
stress	Lomefloxacin 0.012 mM	-0.2	-0.4	-0.4	+0.0	+0.7
vitamin	No vitamins t1	+0.6	-0.2	+0.3	+0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.9	+0.2	-0.1	-0.1	-0.7
stress	Sisomicin 0.125 mg/ml	+0.3	-0.6	-0.1	+0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.7	-0.2	-0.4	-0.3
stress	Nickel (II) chloride 0.6 mM	+0.6	-0.1	+0.4	-0.7	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	+1.4	-0.1	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+1.1	+0.0	+0.2	-0.3
stress	Fusidic 0.025 mg/ml	+0.9	-0.1	+0.5	-0.0	-0.5
carbon source	L-Arabinose (C)	+0.5	-0.5	+0.4	+0.6	-0.3
carbon source	D-Glucose (C)	+1.0	-0.1	+0.2	+0.2	-0.4
stress	Cobalt chloride 0.2 mM	+1.2	-0.2	+0.1	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+1.3	-0.1	+1.3	-0.3
carbon source	D-Sorbitol (C)	+1.4	-0.0	+0.6	+0.2	-0.1
stress	sodium fluoride 100 mM	+2.1	-0.1	+0.1	-0.1	+0.4