Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS23400	HSERO_RS23405	HSERO_RS23410	HSERO_RS23415	HSERO_RS23420
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.6	N.D.	-0.5	-0.4	-0.5
stress	Lomefloxacin 0.012 mM	-0.2	N.D.	+0.0	+0.3	-1.4
carbon source	D-Sorbitol (C)	-0.3	N.D.	-0.6	-0.1	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	-0.5	-0.5	-0.1
stress	sodium fluoride 100 mM	-0.2	N.D.	-0.2	-0.4	-0.4
stress	Sisomicin 0.125 mg/ml	-0.2	N.D.	-0.4	+0.4	-0.9
carbon source	D-Gluconic Acid (C)	-0.4	N.D.	-0.4	-0.2	-0.2
carbon source	L-Lactate (C)	-0.3	N.D.	-0.2	-0.2	-0.5
carbon source	D-Xylose (C)	+0.2	N.D.	+0.1	-0.7	-0.6
carbon source	D-Glucose (C)	+0.1	N.D.	+0.1	-0.1	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.6	N.D.	-0.1	-0.2	+0.2
plant	Control soil assay; outgrowth in LB	+0.1	N.D.	-0.5	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	N.D.	+0.2	-0.8	+0.4
carbon source	Carbon source Phenylacetic 5 mM	-0.3	N.D.	-0.0	-0.5	+0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.4	N.D.	-0.0	-0.4	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	N.D.	-0.4	-0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	N.D.	+0.7	-0.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.3	N.D.	+0.0	-0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	N.D.	-0.1	-0.6	+0.4
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.2	N.D.	-0.5	+0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.2	N.D.	-0.2	-0.4	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	N.D.	+0.5	-0.3	-0.2
stress	A22 0.02 mg/ml	-0.2	N.D.	+0.3	+0.3	-0.5
carbon source	L-Asparagine (C)	-0.5	N.D.	+0.1	+0.1	+0.4
control	NoPredeControl	+0.0	N.D.	+0.4	-0.8	+0.5
stress	nitrate 200 mM	+0.3	N.D.	+0.2	+0.3	-0.7
micoeukaryotes	C.elegans, mixed culture-2	-0.1	N.D.	+0.1	-0.4	+0.5
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.2	N.D.	+0.4	-0.1	+0.5
control	NoPredeControl	-0.1	N.D.	+0.6	+0.1	+0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.0	N.D.	+0.9	+0.5	-0.4