Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS23335 and HSERO_RS23340 are separated by 214 nucleotidesHSERO_RS23340 and HSERO_RS23345 are separated by 24 nucleotidesHSERO_RS23345 and HSERO_RS23350 are separated by 13 nucleotidesHSERO_RS23350 and HSERO_RS23355 are separated by 15 nucleotides HSERO_RS23335: HSERO_RS23335 - cell wall shape-determining protein, at 5,356,280 to 5,357,389 _RS23335 HSERO_RS23340: HSERO_RS23340 - lipoprotein, at 5,357,604 to 5,358,740 _RS23340 HSERO_RS23345: HSERO_RS23345 - 16S rRNA methyltransferase, at 5,358,765 to 5,359,700 _RS23345 HSERO_RS23350: HSERO_RS23350 - glycosylase, at 5,359,714 to 5,360,997 _RS23350 HSERO_RS23355: HSERO_RS23355 - hypothetical protein, at 5,361,013 to 5,361,381 _RS23355
Group Condition HSERO_RS23335 HSERO_RS23340 HSERO_RS23345 HSERO_RS23350 HSERO_RS23355
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -0.5 -0.4 -1.0 N.D.
stress Cisplatin 0.003 mg/ml N.D. -1.1 -1.0 +0.4 N.D.
stress Sisomicin 0.125 mg/ml N.D. -0.4 -1.2 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. -0.3 -0.8 -0.1 N.D.
stress nitrate 200 mM N.D. -0.7 -0.7 +0.3 N.D.
stress Cobalt chloride 0.2 mM N.D. +0.3 -0.9 -0.3 N.D.
stress sodium fluoride 100 mM N.D. -0.5 -0.7 +0.3 N.D.
stress Thallium(I) acetate 0.001 mg/ml N.D. -0.2 -0.8 +0.2 N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -0.5 +0.5 -0.2 N.D.
control NoPredeControl N.D. -0.4 +0.6 -0.2 N.D.
vitamin No vitamins t2 N.D. -0.5 -0.2 +0.6 N.D.
carbon source L-Proline (C) N.D. -0.6 +0.1 +0.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.3 -0.6 +0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 +0.7 -0.3 N.D.
carbon source D-Gluconic Acid (C) N.D. +0.4 -0.6 +0.6 N.D.
carbon source L-Lactate (C) N.D. +0.2 -0.6 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.4 +0.1 +0.8 N.D.
carbon source pyruvate (C) N.D. +0.7 -0.5 +0.2 N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -0.1 +1.0 -0.3 N.D.
carbon source D-Xylose (C) N.D. -0.4 +0.1 +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.6 -0.2 +1.6 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.2 +0.9 -0.2 N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +0.2 +1.1 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.3 -0.1 -0.0 N.D.
carbon source L-Arabinose (C) N.D. +0.6 -0.1 +0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 +0.5 +0.3 N.D.
carbon source L-Arabinose (C) N.D. +0.7 -0.0 +0.5 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.1 +1.0 +0.2 N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.2 +0.4 +0.7 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +1.0 +0.6 +0.4 N.D.
remove
HSERO_RS23335
plot		 remove
HSERO_RS23340
plot		 remove
HSERO_RS23345		 remove
HSERO_RS23350
plot		 remove
HSERO_RS23355
plot