Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS23020	HSERO_RS23025	HSERO_RS23030	HSERO_RS23035	HSERO_RS23040
carbon source	D-Galacturonic Acid (C)	-0.2	+0.1	-0.2	-0.2	-3.1
plant	Control soil assay; outgrowth in LB	-1.1	-0.3	-0.6	+0.1	-0.8
carbon source	D-Galacturonic Acid (C)	-0.2	-0.2	+0.0	-0.2	-1.9
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.0	-0.2	-0.1	-0.0	-1.3
carbon source	L-Fucose (C)	-0.6	+0.1	+0.3	-0.3	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.3	-0.8	-0.0	-0.3
stress	sodium fluoride 100 mM	+0.6	-0.3	-0.0	-0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.2	-0.2	+0.5	-0.3
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.7	-0.0	-0.2	+0.3	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.2	-0.5	-0.2	+0.2
control	NoPredeControl	+1.1	-0.4	-0.0	+0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	-0.2	-0.1	+0.2	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	+0.5	-0.6	+0.1	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	+0.5	+0.3	-0.7	+0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	+0.2	+0.5	+0.2	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.4	-0.3	+0.1	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.8	+0.0	+0.1	-0.6
carbon source	D-Glucose-6-Phosphate (C)	+0.5	+0.2	+0.4	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.1	-0.2	+0.9	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.1	+0.9	+0.1	+0.5
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.7	-0.0	+0.1	+0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.0	+0.4	-0.1	+0.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.0	+0.7	+0.4	+0.1
carbon source	D-Ribose (C)	+0.4	+0.2	+0.5	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.4	+0.4	+0.3	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.6	+0.4	+0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.5	-0.2	-0.0	+0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	+0.1	+0.3	+0.6	+0.4
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	+0.5	-0.0	+0.9	+0.3	+0.4
control	NoPredeControl	+1.5	+0.2	-0.1	+0.3	+0.6