Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS22905 and HSERO_RS22910 are separated by 65 nucleotidesHSERO_RS22910 and HSERO_RS22915 are separated by 300 nucleotidesHSERO_RS22915 and HSERO_RS22920 are separated by 24 nucleotidesHSERO_RS22920 and HSERO_RS22925 are separated by 185 nucleotides HSERO_RS22905: HSERO_RS22905 - 3-alpha-hydroxysteroid dehydrogenase, at 5,255,184 to 5,255,951 _RS22905 HSERO_RS22910: HSERO_RS22910 - benzaldehyde dehydrogenase, at 5,256,017 to 5,257,480 _RS22910 HSERO_RS22915: HSERO_RS22915 - Fis family transcriptional regulator, at 5,257,781 to 5,259,616 _RS22915 HSERO_RS22920: HSERO_RS22920 - hypothetical protein, at 5,259,641 to 5,259,928 _RS22920 HSERO_RS22925: HSERO_RS22925 - MFS transporter, at 5,260,114 to 5,261,550 _RS22925
Group Condition HSERO_RS22905 HSERO_RS22910 HSERO_RS22915 HSERO_RS22920 HSERO_RS22925
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.1 -0.4 -0.3 N.D. -0.3
carbon source D-Xylose (C) +0.3 -0.1 -0.2 N.D. -0.6
carbon source D-Sorbitol (C) +0.0 -0.3 -0.4 N.D. +0.2
stress Sisomicin 0.125 mg/ml -0.6 -0.1 +0.5 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.4 +0.3 N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.2 -0.5 N.D. +0.2
carbon source Xylitol (C) +0.0 -0.5 -0.2 N.D. +0.4
carbon source L-Rhamnose (C) +0.2 -0.4 -0.2 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.1 -0.6 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.2 -0.4 N.D. -0.3
stress Lomefloxacin 0.012 mM -0.3 -0.3 +0.4 N.D. +0.1
carbon source pyruvate (C) +0.4 -0.2 -0.2 N.D. +0.2
carbon source Glycerol (C) +0.5 +0.2 -0.2 N.D. -0.2
carbon source succinate (C) +0.3 -0.2 -0.1 N.D. +0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.6 +0.3 -0.5 N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 -0.2 +0.1 N.D. +0.3
stress nitrite 20 mM -0.3 +0.3 +0.4 N.D. +0.2
carbon source Glycerol (C) -0.1 +0.3 -0.1 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.2 +0.3 N.D. +0.2
carbon source L-Asparagine (C) -0.2 +0.3 +0.2 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +0.2 -0.3 N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.2 -0.1 N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.2 +0.1 N.D. -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.3 -0.2 N.D. +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +0.7 +0.0 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.3 +0.2 N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.0 +0.7 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.9 +0.2 N.D. +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.7 +0.1 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.3 +0.1 N.D. +0.9
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