Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS22675	HSERO_RS22680	HSERO_RS22685	HSERO_RS22690	HSERO_RS22695
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.2	-0.5	+0.1	-1.0
carbon source	D-Gluconic Acid (C)	+0.1	+0.0	-0.5	-0.2	-1.1
carbon source	L-Arabinose (C)	-0.3	-0.3	-0.0	-0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.0	-0.1	-0.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.0	+0.2	-0.3	-0.9
plant	Control soil assay; outgrowth in LB	-0.4	+0.0	+0.0	+0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.3	-0.2	-0.2	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.2	+0.2	-0.1	-1.1
r2a control	R2A control	-0.4	-0.2	+0.1	-0.0	-0.8
carbon source	pyruvate (C)	-0.2	+0.1	-0.3	-0.3	-0.6
stress	sodium fluoride 100 mM	-0.2	-0.1	-0.2	+0.4	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	-0.3	-0.2	-0.8
carbon source	D,L-Lactate (C)	-0.1	-0.0	+0.0	+0.2	-1.2
carbon source	Xylitol (C)	-0.1	+0.1	+0.4	-0.1	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	-0.1	-0.3	-0.6	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+0.1	+0.2	-0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	+0.3	-0.3	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.2	-0.1	-0.4	-0.4
carbon source	D-Mannose (C)	-0.1	+0.2	+0.0	+0.4	-1.2
carbon source	Xylitol (C)	-0.6	+0.2	+0.2	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-0.2	+0.5	+0.1	-0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.2	+0.1	-0.4	+0.4	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	-0.6	+0.2	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	-0.2	-0.5	-0.2	+0.3
control	NoPredeControl	+0.4	-0.6	+0.5	-0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.2	-0.5	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.1	-0.4	-0.3	+0.6
plant	Control soil assay; outgrowth in LB	+0.1	-0.1	+0.2	-0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.2	+0.7	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.2	-0.2	-0.2	+1.7