Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS22480	HSERO_RS22485	HSERO_RS22490	HSERO_RS22495	HSERO_RS22500
carbon source	L-mannose (C)	-3.8	-4.0	-0.3	-0.2	-0.1
carbon source	L-mannose (C)	-3.7	-4.8	-0.1	+0.1	+0.1
carbon source	D-Mannose (C)	-3.0	-3.8	-0.1	-0.0	-0.2
carbon source	D-Mannose (C)	-3.5	-3.0	-0.0	+0.2	-0.0
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.3	-0.3	-1.0	-0.9	-0.9
carbon source	D-Xylose (C)	-1.3	-1.7	-0.1	-0.0	+0.2
carbon source	D-Xylose (C)	-1.0	-1.6	-0.0	-0.0	-0.1
vitamin	No vitamins t2	-0.9	-1.8	+0.2	+0.0	+0.3
carbon source	D-Glucose-6-Phosphate (C)	-0.9	-1.1	-0.0	-0.2	+0.2
carbon source	D-Glucose-6-Phosphate (C)	-0.8	-1.3	-0.0	+0.0	+0.2
carbon source	D-Ribose (C)	-0.7	-1.1	-0.3	-0.2	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	-0.4	-0.5	-0.5	-0.6	+0.1
carbon source	D-Glucose (C)	-0.7	-1.4	-0.1	-0.1	+0.4
vitamin	With vitamins t2	-0.9	-1.2	-0.0	-0.1	+0.5
carbon source	D-Glucose (C)	-0.8	-1.2	+0.1	+0.1	+0.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.6	-0.5	-0.5	+0.1	+0.1
carbon source	D-Galactose (C)	-0.1	-0.4	-0.1	-1.0	+0.2
nutrient	Min media with glucose	-0.5	-0.7	-0.3	-0.1	+0.4
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM	-0.5	-0.9	-0.2	+0.1	+0.4
carbon source	Carbon source D-Glucose 20 mM	-0.3	-1.0	-0.2	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.6	+0.5	-0.6	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.2	+0.6	-0.9	-0.2
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM	-0.5	-0.8	+0.2	+0.4	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.5	-0.5	-0.0	+0.3	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	+0.5	-0.9	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.3	+0.0	-0.2	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.4	+1.2	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	+0.5	+0.5	-0.2	+0.5
carbon source	L-Fucose (C)	+0.7	+0.9	+0.0	+0.3	-0.1
control	NoPredeControl	+0.2	+0.2	+0.6	+0.6	+0.4