Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS22210 and HSERO_RS22215 are separated by 5 nucleotidesHSERO_RS22215 and HSERO_RS22220 are separated by 134 nucleotidesHSERO_RS22220 and HSERO_RS22225 are separated by 134 nucleotidesHSERO_RS22225 and HSERO_RS22230 are separated by 150 nucleotides HSERO_RS22210: HSERO_RS22210 - branched-chain amino acid ABC transporter permease, at 5,078,501 to 5,079,520 _RS22210 HSERO_RS22215: HSERO_RS22215 - branched-chain amino acid ABC transporter permease, at 5,079,526 to 5,080,497 _RS22215 HSERO_RS22220: HSERO_RS22220 - D-ribose transporter ATP-binding protein, at 5,080,632 to 5,082,146 _RS22220 HSERO_RS22225: HSERO_RS22225 - ABC transporter substrate-binding protein, at 5,082,281 to 5,083,258 _RS22225 HSERO_RS22230: HSERO_RS22230 - DeoR faimly transcriptional regulator, at 5,083,409 to 5,084,212 _RS22230
Group Condition HSERO_RS22210 HSERO_RS22215 HSERO_RS22220 HSERO_RS22225 HSERO_RS22230
carbon source L-Rhamnose (C) -5.4 -4.4 -3.4 -4.8 -6.6
carbon source L-Rhamnose (C) -4.3 -4.0 -3.5 -4.6 -5.3
carbon source L-Rhamnose (C) -3.5 -2.6 -3.5 -2.9 -4.3
carbon source L-Rhamnose (C) -4.1 -1.6 -3.0 -3.0 -3.8
stress Lomefloxacin 0.012 mM -0.9 -1.3 -0.2 -0.1 -0.6
carbon source L-Arabinose (C) -0.4 -0.6 -0.1 -0.2 -1.2
stress Sisomicin 0.125 mg/ml -0.8 -0.7 -0.1 -0.1 -0.2
carbon source D-Glucose (C) -0.3 -0.2 -0.6 -0.2 -0.4
carbon source D-Sorbitol (C) +0.3 -1.5 -0.4 -0.0 +0.3
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.2 -1.1 -0.1 -0.3 +0.0
carbon source D-Glucose-6-Phosphate (C) -0.3 -0.4 -0.5 +0.2 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.2 -1.1 -0.1 -0.3 +0.4
carbon source Glycerol (C) -0.1 -0.2 -0.3 +0.4 -0.5
supernatant control Vogels_fungal_media; pH 5.5 -0.0 -1.1 +0.1 +0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.3 +0.2 -0.4 -0.3
carbon source Xylitol (C) -0.3 +0.7 -0.4 -0.2 -0.2
carbon source D-Galactose (C) -0.1 +0.5 -0.6 +0.1 -0.1
carbon source D-Glucose-6-Phosphate (C) -0.7 +0.6 -0.2 +0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 +0.6 -0.4 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +0.2 -0.2 +0.2 -0.7
carbon source a-Ketoglutaric (C) -0.5 +0.4 -0.2 +0.2 +0.3
vitamin With vitamins t2 -0.1 +0.8 -0.3 +0.1 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.3 -0.2 +0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.9 -0.2 -0.1 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.2 +0.5 +0.3 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 +0.9 +0.4 -0.4 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +0.2 +0.6 -0.2 +0.2
vitamin With vitamins t1 -0.0 +0.6 -0.1 +0.3 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.5 -0.2 +0.8 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.0 +0.8 +0.2 +0.3 +1.3
remove
HSERO_RS22210
plot		 remove
HSERO_RS22215
plot		 remove
HSERO_RS22220		 remove
HSERO_RS22225
plot		 remove
HSERO_RS22230
plot