Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS22010 and HSERO_RS22015 are separated by 17 nucleotidesHSERO_RS22015 and HSERO_RS22020 are separated by 86 nucleotidesHSERO_RS22020 and HSERO_RS22025 are separated by 19 nucleotidesHSERO_RS22025 and HSERO_RS22030 are separated by 477 nucleotides HSERO_RS22010: HSERO_RS22010 - toxin RelE, at 5,033,509 to 5,033,802 _RS22010 HSERO_RS22015: HSERO_RS22015 - DNA-binding protein, at 5,033,820 to 5,034,212 _RS22015 HSERO_RS22020: HSERO_RS22020 - membrane protein, at 5,034,299 to 5,034,904 _RS22020 HSERO_RS22025: HSERO_RS22025 - aromatic amino acid aminotransferase, at 5,034,924 to 5,036,114 _RS22025 HSERO_RS22030: HSERO_RS22030 - LysR family transcriptional regulator, at 5,036,592 to 5,037,515 _RS22030
Group Condition HSERO_RS22010 HSERO_RS22015 HSERO_RS22020 HSERO_RS22025 HSERO_RS22030
carbon source L-Malic (C) +0.3 -0.4 -0.3 -3.5 -0.2
carbon source D-Galacturonic Acid (C) +0.0 -0.7 -0.3 -2.5 -0.1
carbon source L-Glutamine (C) -0.2 +0.4 -0.2 -2.8 -0.1
carbon source L-Malic (C) +0.8 +1.1 -0.1 -4.6 +0.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.3 -0.2 +0.3 -2.2 +0.1
carbon source L-Asparagine (C) +0.2 -0.5 +0.2 -2.2 +0.1
nitrogen source L-Proline (N) +0.6 -0.4 -0.4 -1.9 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -1.5 +0.3 -1.0 -0.1
carbon source D-Galacturonic Acid (C) +0.1 +0.1 -0.2 -2.3 +0.2
carbon source m-Inositol (C) +0.6 -0.9 -1.3 -0.5 +0.2
carbon source L-Arabinose (C) +0.3 +0.6 -0.2 -2.2 -0.0
carbon source D-Mannose (C) +0.7 -1.1 +0.1 -1.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.1 +1.3 -1.0 -0.1
stress Sisomicin 0.125 mg/ml +0.5 +0.3 -1.1 -0.9 +0.2
carbon source succinate (C) +0.3 +1.2 -0.5 -2.0 +0.2
carbon source L-Rhamnose (C) +0.5 +0.5 -0.5 -1.5 +0.4
carbon source L-Proline (C) +0.8 +0.8 -0.5 -1.9 +0.3
carbon source L-Fucose (C) -0.2 +0.9 +0.1 -1.5 +0.2
carbon source L-Glutamine (C) +0.4 +1.3 -0.1 -2.3 +0.3
carbon source D-Lactate (C) +0.3 +0.9 -0.1 -1.4 -0.2
carbon source L-Arabinose (C) +0.9 +0.6 -0.2 -1.9 +0.2
carbon source a-Ketoglutaric (C) +0.5 +0.6 +0.2 -1.5 +0.2
carbon source succinate (C) +0.2 +1.9 -0.1 -1.9 +0.3
carbon source D-Ribose (C) +1.0 +0.5 +0.3 -1.8 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.4 +0.8 -1.2 +0.2
carbon source L-Rhamnose (C) +0.2 +1.3 +0.7 -1.6 +0.2
stress nitrite 20 mM +0.3 +0.8 +0.7 -0.5 -0.5
carbon source pyruvate (C) +1.0 +0.8 -0.3 -0.6 +0.3
carbon source L-Asparagine (C) +0.9 +0.4 +0.6 -0.8 +0.2
carbon source D-Sorbitol (C) +0.7 +1.5 -0.3 -0.2 +0.4
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