Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS21875 and HSERO_RS21880 are separated by 21 nucleotidesHSERO_RS21880 and HSERO_RS21885 are separated by 174 nucleotidesHSERO_RS21885 and HSERO_RS21890 overlap by 4 nucleotidesHSERO_RS21890 and HSERO_RS21895 are separated by 8 nucleotides HSERO_RS21875: HSERO_RS21875 - endoribonuclease L-PSP, at 5,008,274 to 5,008,624 _RS21875 HSERO_RS21880: HSERO_RS21880 - FAD-dependent oxidoreductase, at 5,008,646 to 5,009,785 _RS21880 HSERO_RS21885: HSERO_RS21885 - nuclease PIN, at 5,009,960 to 5,010,643 _RS21885 HSERO_RS21890: HSERO_RS21890 - hypothetical protein, at 5,010,640 to 5,011,392 _RS21890 HSERO_RS21895: HSERO_RS21895 - TonB-dependent receptor, at 5,011,401 to 5,013,746 _RS21895
Group Condition HSERO_RS21875 HSERO_RS21880 HSERO_RS21885 HSERO_RS21890 HSERO_RS21895
carbon source D-Ribose (C) -0.3 -0.1 -0.3 -0.6 -0.2
carbon source L-Arabinose (C) -0.6 -0.5 +0.2 -0.5 +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.8 -0.3 +0.3 -0.2 -0.0
carbon source D-Galactose (C) -0.1 +0.2 +0.1 -1.1 -0.2
carbon source L-Rhamnose (C) -0.2 -0.4 +0.4 -0.5 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -0.1 +0.1 -0.2 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 -0.2 -0.2 -0.7 +0.2
carbon source L-Proline (C) -0.4 +0.3 +0.1 -0.6 +0.1
carbon source L-Asparagine (C) -0.7 +0.1 +0.1 -0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.0 +0.5 -0.3 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 +0.4 -0.7 -0.3 +0.2
stress Lomefloxacin 0.012 mM +0.2 +0.1 +0.5 +0.2 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -0.4 -0.3 +1.0 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +1.0 -0.6 -0.0 +0.2
agar plate interaction control Taped volatile agar plate with no fungus +0.7 +0.1 -0.4 +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.2 -0.3 +0.4 +0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.9 -0.3 -0.2 +0.1 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.4 +0.2 +0.5 -0.1
carbon source D-Galactose (C) +0.9 +0.3 -0.4 -0.1 -0.1
stress Chloride stress +0.6 +0.3 -0.4 +0.1 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.2 -0.0 +0.4 +0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.3 +0.4 -0.6 +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 -0.3 +0.5 +0.3 -0.1
nitrogen source nitrate (N); low aeration +0.8 +0.3 -0.1 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.6 +0.2 -0.3 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.2 +0.8 -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.6 -0.1 -0.2 -0.3 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.6 +0.1 -0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.1 +0.3 +0.4 +0.7
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.2 +0.3 -0.2 +0.1 +0.2
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