Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS21825 and HSERO_RS21830 are separated by 74 nucleotidesHSERO_RS21830 and HSERO_RS21835 are separated by 75 nucleotidesHSERO_RS21835 and HSERO_RS21840 overlap by 4 nucleotidesHSERO_RS21840 and HSERO_RS21845 are separated by 559 nucleotides HSERO_RS21825: HSERO_RS21825 - F0F1 ATP synthase subunit B, at 4,998,132 to 4,998,602 _RS21825 HSERO_RS21830: HSERO_RS21830 - F0F1 ATP synthase subunit C, at 4,998,677 to 4,998,922 _RS21830 HSERO_RS21835: HSERO_RS21835 - ATP synthase subunit A, at 4,998,998 to 4,999,819 _RS21835 HSERO_RS21840: HSERO_RS21840 - F0F1-type ATP synthase subunit I, at 4,999,816 to 5,000,160 _RS21840 HSERO_RS21845: HSERO_RS21845 - transcription regulator protein, at 5,000,720 to 5,002,177 _RS21845
Group Condition HSERO_RS21825 HSERO_RS21830 HSERO_RS21835 HSERO_RS21840 HSERO_RS21845
stress Lomefloxacin 0.012 mM N.D. N.D. N.D. N.D. -0.7
carbon source L-Arabinose (C) N.D. N.D. N.D. N.D. -0.5
carbon source D-Gluconic Acid (C) N.D. N.D. N.D. N.D. -0.4
carbon source L-Rhamnose (C) N.D. N.D. N.D. N.D. -0.4
stress Sisomicin 0.125 mg/ml N.D. N.D. N.D. N.D. -0.4
carbon source D-Lactate (C) N.D. N.D. N.D. N.D. -0.4
vitamin With vitamins t1 N.D. N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. +0.3
carbon source D-Galactose (C) N.D. N.D. N.D. N.D. +0.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. N.D. N.D. N.D. +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. N.D. N.D. +0.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. N.D. N.D. +0.4
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. N.D. N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. +0.5
plant Control soil assay; outgrowth in LB N.D. N.D. N.D. N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.5
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. N.D. N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.6
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