Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS21665 and HSERO_RS21670 are separated by 290 nucleotidesHSERO_RS21670 and HSERO_RS21675 are separated by 149 nucleotidesHSERO_RS21675 and HSERO_RS21680 are separated by 16 nucleotidesHSERO_RS21680 and HSERO_RS21685 are separated by 17 nucleotides HSERO_RS21665: HSERO_RS21665 - oxygen-insensitive nitroreductase, at 4,959,820 to 4,960,413 _RS21665 HSERO_RS21670: HSERO_RS21670 - tRNA modification GTPase TrmE, at 4,960,704 to 4,962,104 _RS21670 HSERO_RS21675: HSERO_RS21675 - insertase, at 4,962,254 to 4,963,951 _RS21675 HSERO_RS21680: HSERO_RS21680 - hypothetical protein, at 4,963,968 to 4,964,330 _RS21680 HSERO_RS21685: HSERO_RS21685 - ribonuclease P, at 4,964,348 to 4,964,653 _RS21685
Group Condition HSERO_RS21665 HSERO_RS21670 HSERO_RS21675 HSERO_RS21680 HSERO_RS21685
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.4 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.3 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 N.D. N.D. N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 N.D. N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.9 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.9 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 N.D. N.D. N.D. N.D.
control NoPredeControl -0.8 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.8 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 N.D. N.D. N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 -0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 N.D. N.D. N.D. N.D.
carbon source D-Gluconic Acid (C) -0.7 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.7 N.D. N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 N.D. N.D. N.D. N.D.
carbon source pyruvate (C) +0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 N.D. N.D. N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +1.2 N.D. N.D. N.D. N.D.
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