Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS21580	HSERO_RS21585	HSERO_RS21590	HSERO_RS21595	HSERO_RS21600
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.0	-0.3	-2.2	+0.1	+0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.0	-1.2	-0.9	-0.1	-0.2
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.0	-0.3	-2.2	+0.0	+0.1
stress	sodium fluoride 100 mM	-0.1	-0.5	-1.4	+0.1	+0.1
stress	Cisplatin 0.003 mg/ml	+0.0	-0.4	-1.7	+0.2	-0.0
stress	Thallium(I) acetate 0.001 mg/ml	-0.1	+0.1	-2.1	+0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.2	-1.2	-0.4	+0.1	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-0.9	-0.8	-0.0	+0.1
carbon source	D-Lactate (C)	+0.1	+0.0	-1.5	-0.1	-0.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.2	-0.0	-1.4	-0.1	+0.0
nitrogen source	nitrate (N); high aeration	-2.4	+0.3	+0.4	+0.1	+0.0
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.0	-0.0	-1.6	-0.0	+0.1
stress	Lomefloxacin 0.012 mM	-0.2	+0.4	-1.8	+0.0	+0.0
carbon source	D-Lactate (C)	+0.1	-0.3	-1.4	+0.1	-0.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.3	-0.1	-1.9	+0.2	+0.0
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.7	-0.9	+0.1	+0.0
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.0	-0.0	-1.5	+0.1	+0.1
nitrogen source	nitrate (N); low aeration	-2.0	+0.0	+0.6	-0.0	+0.0
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	-0.4	+0.1	-1.3	+0.2	+0.1
carbon source	L-Lactate (C)	+0.1	+0.3	-1.1	-0.3	-0.1
nitrogen source	nitrate (N); low aeration	-2.0	+0.4	+0.6	-0.0	+0.1
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	-0.2	+0.3	-1.3	+0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.8	-0.7	+0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.4	-1.0	+0.4	+0.1
carbon source	D,L-Lactate (C)	+0.3	+0.2	-1.1	-0.2	-0.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	-0.2	-1.1	+0.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.4	-1.1	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-0.4	-0.5	+0.2	+0.1
carbon source	D-Galactose (C)	+0.6	+0.7	-0.7	-0.2	-0.0
carbon source	L-mannose (C)	-0.1	+0.4	+1.2	+0.0	+0.1